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Report for CCDS20317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20317.1 Public Mus musculus 6 Aak1 23 108 98 CCDS HistoryNCBI Gene:269774Re-query CCDS DB by CCDS ID:20317.1Re-query CCDS DB by GeneID:269774See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003710.9 ENSMUSP00000003710.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003710.9Link to Ensembl Protein Viewer:ENSMUSP00000003710.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000003710Re-query CCDS DB by Protein ID:ENSMUSP00000003710
Original member NCBI NM_177762.6 NP_808430.2 Updated not alive Link to Nucleotide Sequence:NM_177762.6Link to Protein Sequence:NP_808430.2Re-query CCDS DB by Nucleotide ID:NM_177762Re-query CCDS DB by Protein ID:NP_808430
Current member NCBI NM_177762.7 NP_808430.2 Accepted alive Link to Nucleotide Sequence:NM_177762.7Link to Protein Sequence:NP_808430.2Re-query CCDS DB by Nucleotide ID:NM_177762Re-query CCDS DB by Protein ID:NP_808430Link to BLAST:NP_808430.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808430.2 878 Q3UHJ0-2 878 100% 0 0

Chromosomal Locations for CCDS 20317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86850053 86850215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86925014 86925132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86935430 86935538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86936942 86937084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86944357 86944478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86946104 86946185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86946861 86946993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86949542 86949645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86950781 86950860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86955104 86955258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86956259 86956572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86963993 86964225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86965477 86965634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86967269 86967373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86970991 86971086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86981296 86981397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86982542 86982643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86983812 86983922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86986264 86986374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86987204 86987298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2637 nt):
ATGAAGAAGTTTTTCGACTCCAGGCGGGAGCAGGGGAGCTCTGGCCTGGGTTCAGGCTCCAGCGGAGGAG
GGGGCAGCAGCTCAGGCCTGGGCAGTGGTTACATCGGAAGGGTCTTCGGCATCGGGAGGCAGCAGGTCAC
CGTGGACGAGGTGTTGGCGGAAGGTGGATTCGCTCTTGTCTTTCTGGTGAGAACAAGCAATGGGGTGAAA
TGTGCCTTGAAACGTATGTTTGTCAACAATGAACATGACCTCCAGGTGTGCAAGAGGGAGATCCAGATCA
TGAGAGACCTATCAGGGCACAAGAACATTGTGGGCTACATTGATTCTAGTATCAACAATGTGAGCAGCGG
CGACGTCTGGGAAGTTCTCATTCTCATGGACTTCTGCAGAGGAGGCCAGGTGGTAAACCTGATGAACCAG
CGTCTCCAGACAGGCTTCACAGAGAATGAAGTGCTGCAGATATTCTGTGACACCTGTGAAGCTGTGGCCC
GCCTGCATCAGTGCAAAACTCCCATTATCCACCGGGACCTGAAGGTTGAAAATATCCTCTTGCATGACCG
AGGCCACTATGTCTTGTGTGACTTTGGAAGTGCCACCAACAAATTCCAGAATCCACAGGCCGAGGGAGTC
AATGCAGTAGAAGATGAGATTAAGAAATACACAACGCTCTCCTATCGAGCCCCAGAAATGGTCAACTTGT
ACAGTGGCAAAATCATCACTACGAAGGCAGATATTTGGGCTCTAGGCTGTTTGTTGTATAAATTATGCTA
CTTCACTTTGCCGTTTGGGGAGAGCCAGGTGGCGATTTGTGACGGAAGCTTCACAATTCCTGATAACTCT
CGTTATTCTCAAGATATGCACTGCCTTATTAGGTATATGTTGGAACCAGACCCTGACAAAAGGCCGGATA
TTTACCAGGTTTCATACTTCTCATTTAAACTACTCAAGAAAGAATGCCCCGTTCCAAATGTACAGAACTC
TCCCATTCCTGCAAAACTTCCTGAACCAGTGAAAGCCAGTGAAGCAGCTGTGAAAAAGACCCAGCCAAAG
GCCAGACTGACCGATCCCATTCCCACCACAGAGACTTCAATCGCACCCCGCCAGAGGCCTAAAGCTGGGC
AGACTCAGCCAAACCCAGGCATCCTTCCCATCCAGCCAGCCCTGACTCCTCGGAAGAGGGCCACTGTTCA
GCCCCTACCTCAGGCTGCAGGACCCAGCAATCAGCCTGGACTTCTACCCAGTGTTTCCCAACCTAAAGCC
CAAGCCACACCCAGTCAACCTCTTCAGTCATCTCAACCCAAGCAACCACAAGCTCCACCCACCCCACAGC
AGACACCTGCTACCCAGACACAAGGTTTGCCCACCCAGGCCCAGGCCACTCCCCAGCACCAGCAGCAACA
CCTCCTCAAGCAACAGCAGCAACAGCAGCAACAGCCTCAGCAGCCTACAGCACCACCACAGCCTGCAGGC
ACCTTTTACCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGCTCAGACTCAGCAGCAGATTCAAGCCCCAG
TGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGATCTCTCAC
TCCTCCATCATCACCCAAAACCCAACGTGCTGGGCACAGACGGATTCTCAGTGATGTAACCCACAGTGCA
GTCTTTGGGGTTCCTGCCAGCAAATCAACCCAGCTGCTCCAGGCAGCTGCAGCTGAGGCCAGTCTCAATA
AATCTAAGTCTGCAACCACCACTCCCTCAGGCTCTCCACGGACTTCACAGCAGAATGTCTCCAATGCTTC
AGAAGGCTCCACATGGAATCCTTTTGATGACGACAACTTCTCCAAACTCACAGCTGAAGAGCTGCTAAAC
AAGGACTTTGCCAAGCTTGGGGAAGGAAAGCTGCCTGAGAAGCTTGGTGGCTCTGCAGAGAGTTTGATCC
CAGGCTTCCAGCCAACACAAGGAGATGCCTTCACCACTCCTTCTTTTTCTGCTGGAACTGCTGAAAAAAG
GAAGGGGGGCCAGGCTGTGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAA
GTACCTGATGCTCCAGAAAAACTAATCGAGGGACTCAAATCTCCTGACACTTCTCTTCTGCTCCCTGACC
TCTTGCCTATGACAGATCCTTTTGGCAGCACTTCTGATGCTGTTATTGACAAAGCTGATGTTGCTGTTGA
GAGTCTCATACCTGGACTGGAGCCACCTGTTGCTCAGCGCCTCCCATCTCAAACGGAATCTGTGACCTCG
AACCGCACAGACTCTCTCACGGGGGAAGACTCTCTGCTTGACTGCTCTCTGCTTTCTAACCCTACTGCTG
GCCTTCTGGAGGAGTTTGCCCCCATAGCACTCTCTGCTCCCACTCATAAAGCTGCAGAAGATAGCAATCT
CATCTCAGGTTTTGGTGTTGCTGAGGGCTCCGAAAAGGTGGCAGAAGATGAGTTTGACCCTATTCCTGTA
CTAATTACCAAAAACACACAAGGTGGGCACTCTAGGAACAGCAGTGGGAGCTCTGAGTCCAGTCTTCCCA
ACCTAGCCAGGTCTTTGCTGCTGGTGGATCAGCTCATAGACCTGTAG

Translation (878 aa):
MKKFFDSRREQGSSGLGSGSSGGGGSSSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFALVFLVRTSNGVK
CALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQ
RLQTGFTENEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQAEGV
NAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGSFTIPDNS
RYSQDMHCLIRYMLEPDPDKRPDIYQVSYFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAVKKTQPK
ARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRATVQPLPQAAGPSNQPGLLPSVSQPKA
QATPSQPLQSSQPKQPQAPPTPQQTPATQTQGLPTQAQATPQHQQQHLLKQQQQQQQQPQQPTAPPQPAG
TFYQQQQQQQQQQAQTQQQIQAPVRQQPKVQTTPPPTIQGQKVGSLTPPSSPKTQRAGHRRILSDVTHSA
VFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRTSQQNVSNASEGSTWNPFDDDNFSKLTAEELLN
KDFAKLGEGKLPEKLGGSAESLIPGFQPTQGDAFTTPSFSAGTAEKRKGGQAVDSGIPLLSVSDPFIPLQ
VPDAPEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIDKADVAVESLIPGLEPPVAQRLPSQTESVTS
NRTDSLTGEDSLLDCSLLSNPTAGLLEEFAPIALSAPTHKAAEDSNLISGFGVAEGSEKVAEDEFDPIPV
LITKNTQGGHSRNSSGSSESSLPNLARSLLLVDQLIDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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