NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50445.1 Public Mus musculus 19 Bloc1s2 23 108 98 CCDS HistoryNCBI Gene:73689Re-query CCDS DB by CCDS ID:50445.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079033.5 ENSMUSP00000078042.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079033.5Link to Ensembl Protein Viewer:ENSMUSP00000078042.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079033Re-query CCDS DB by Protein ID:ENSMUSP00000078042
Original member Current member NCBI NM_028607.1 NP_082883.1 Accepted alive Link to Nucleotide Sequence:NM_028607.1Link to Protein Sequence:NP_082883.1Re-query CCDS DB by Nucleotide ID:NM_028607Re-query CCDS DB by Protein ID:NP_082883Link to BLAST:NP_082883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082883.1 143 Q9CWG9 143 100% 0 0

Chromosomal Locations for CCDS 50445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44139682 44139713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44142124 44142228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44143021 44143140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44145941 44146057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44146359 44146416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGCGGCGGCTGCGGAGGGCGTCCCGGCGACGCGACGGGAGGAGCAGCCACCTCGAGATGATGCTGCGG
TGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTC
CAAAATGGCCACATATTTGACTGGGGAACTGACAGCCACCAGTGAAGACTACAAACTCCTGGAAAATATG
AATAAGCTAACAAGCTTGAAGTACCTTGAAATGAAAGATATTGCTATCAACATCAGCAGAAACCTGAAGG
ACTTAAACCAGAAATATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGC
AGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGGAAGCCAAGTACAAGAAGTTG
GAGAAGCGATGA

Translation (143 aa):
MAAAAEGVPATRREEQPPRDDAAVETAEEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENM
NKLTSLKYLEMKDIAINISRNLKDLNQKYAELQPYLDQINMIEEQVAALEQAAYKLDAYSKKLEAKYKKL
EKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH