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Report for CCDS21826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21826.1 Public Mus musculus 7 Spns1 23 108 98 CCDS HistoryNCBI Gene:73658Re-query CCDS DB by CCDS ID:21826.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032994.14 ENSMUSP00000032994.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032994.14Link to Ensembl Protein Viewer:ENSMUSP00000032994.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032994Re-query CCDS DB by Protein ID:ENSMUSP00000032994
Original member Current member NCBI NM_023712.3 NP_076201.2 Accepted alive Link to Nucleotide Sequence:NM_023712.3Link to Protein Sequence:NP_076201.2Re-query CCDS DB by Nucleotide ID:NM_023712Re-query CCDS DB by Protein ID:NP_076201Link to BLAST:NP_076201.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076201.2 528 Q8R0G7 528 100% 0 0

Chromosomal Locations for CCDS 21826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126370319 126370413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126370735 126370906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126371178 126371276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126371541 126371606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126371958 126372147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126372412 126372567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126372745 126372890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126373770 126373836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126373922 126374073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126375067 126375203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126376674 126376739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126376837 126377077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCGGGTCCGACACGGCGCCCTTCCTCAGCCAAGCAGATGATCCTGATGACGGGCCAGCGCCCGGCC
ATCCGGGGTTGCCAGGACCCATGGGGAATCCAAAGTCCGGGGAACTCGAGGTCCCAGACTGTGAGGGGCT
ACAGCGCATCACTGGCTTATCTCGGGGCCATTCGACCCTCATAGTGGTGGTTCTGTGCTACATTAACCTC
CTGAACTACATGGACCGCTTCACCGTGGCAGGGGTTCTTACAGACATCGAGCAGTTCTTTAACATCGGAG
ATGGTAGTACTGGCCTCATCCAGACTGTGTTCATCTCCAGTTACATGGTGTTGGCACCAGTGTTTGGCTA
CCTGGGTGACAGGTACAATCGAAAGTACCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTG
GGATCATCCTTCATCCCCAGAGAGCATTTCTGGCTGCTTCTCCTGACCCGGGGCCTGGTGGGGGTCGGGG
AGGCCAGTTACTCCACCATTGCGCCCACCCTGATCGCCGACCTCTTCGTGGCAGACCAGCGGAGTCGGAT
GCTCAGTATCTTCTACTTTGCCATCCCTGTGGGCAGTGGTCTAGGTTACATTGCTGGCTCCAAAGTGAAA
GACGTGGCTGGAGACTGGCACTGGGCTCTACGGGTGACACCAGGTCTAGGAGTGCTGGCTGTCCTGCTGC
TGTTCCTGGTGGTCCAGGAGCCCCCAAGAGGAGCCGTGGAGCGCCACTCAGGTTCACCACCCCTGAGCCC
CACCTCTTGGTGGGCAGATCTGAAGGCACTGGCACGAAATCCTAGTTTCGTCCTGTCTTCCCTTGGCTTC
ACCTCTGTGGCCTTTGTCACGGGCTCCCTGGCTCTCTGGGCCCCAGCGTTCCTGCTGCGCTCCCGGGTTG
TTCTGGGAGAGACTCCGCCCTGTCTCCCTGGAGATTCATGCTCTTCCTCTGACAGTCTCATCTTTGGACT
CATCACTTGCCTGACTGGAGTCCTGGGTGTGGGCCTGGGAGTGGAGATCAGCCGCCGCCTTCGCCGCTTC
AACCCTCGGGCTGACCCACTCGTCTGTGCAGCTGGCCTCCTGGGTTCGGCGCCTTTCCTCTTCCTGGCCC
TGGCCTGTGCCCGAGGTAGCATCGTGGCCACCTATATTTTTATCTTTATTGGGGAGACCCTGTTGTCCAT
GAACTGGGCCATTGTGGCTGACATCCTGTTGTACGTGGTGATCCCAACTCGACGGTCCACGGCTGAGGCC
TTCCAGATAGTGCTGTCCCACTTGCTAGGAGATGCAGGGAGCCCTTACCTCATTGGTCTAATCTCTGACC
GCCTCCGACGGAGCTGGCCCCCTTCCTTCCTGTCCGAGTTCCGGGCTCTGCAGTTCTCGCTCATGCTCTG
TGCTTTCGTTGGGGCACTGGGTGGTGCGGCCTTCCTGGGCACCGCCATGTTCATTGAAGATGACCGCCGG
CGGGCTCAACTCCACGTGCAGGGTCTGTTGCATGAGTCTGGGCCCTCAGATGACCGGATTGTAGTACCTC
AGCGAGGCCGTTCTACCCGAGTCCCCGTGTCCAGCGTGCTCATCTGA

Translation (528 aa):
MAGSDTAPFLSQADDPDDGPAPGHPGLPGPMGNPKSGELEVPDCEGLQRITGLSRGHSTLIVVVLCYINL
LNYMDRFTVAGVLTDIEQFFNIGDGSTGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTL
GSSFIPREHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVK
DVAGDWHWALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLSPTSWWADLKALARNPSFVLSSLGF
TSVAFVTGSLALWAPAFLLRSRVVLGETPPCLPGDSCSSSDSLIFGLITCLTGVLGVGLGVEISRRLRRF
NPRADPLVCAAGLLGSAPFLFLALACARGSIVATYIFIFIGETLLSMNWAIVADILLYVVIPTRRSTAEA
FQIVLSHLLGDAGSPYLIGLISDRLRRSWPPSFLSEFRALQFSLMLCAFVGALGGAAFLGTAMFIEDDRR
RAQLHVQGLLHESGPSDDRIVVPQRGRSTRVPVSSVLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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