NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78067.1 Public Homo sapiens 5 PCDHB6 24 110 108 CCDS HistoryNCBI Gene:56130Re-query CCDS DB by CCDS ID:78067.1Re-query CCDS DB by GeneID:56130See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78067.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622991.1 ENSP00000485034.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622991.1Link to Ensembl Protein Viewer:ENSP00000485034.1Re-query CCDS DB by Nucleotide ID:ENST00000622991Re-query CCDS DB by Protein ID:ENSP00000485034
Original member Current member NCBI NM_001303145.2 NP_001290074.1 Accepted alive Link to Nucleotide Sequence:NM_001303145.2Link to Protein Sequence:NP_001290074.1Re-query CCDS DB by Nucleotide ID:NM_001303145Re-query CCDS DB by Protein ID:NP_001290074Link to BLAST:NP_001290074.1

Chromosomal Locations for CCDS 78067.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141150666 141152642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGCTCCTGAAAATATCAGAAATTACTATGCCAGGAAAGATATTTCCTTTGAAAATGGCACACGATTTAG
AC
ACCGGCAGCAACGGCCTTCAGAGGTACACAATCAGCTCCAACCCTCACTTCCACGTTCTCACCCGCAA
T
CGCAGCGAAGGCAGGAAGTTCCCGGAGCTGGTGCTAGACAAACCGTTGGACCGCGAGGAGCAGCCCCAA
CTC
AGGCTAACGCTGATCGCGCTGGATGGCGGGTCTCCGCCCCGGTCAGGGACCTCCGAGATTCAGATCC
AG
GTTTTGGACATCAATGACAACGTCCCCGAGTTTGCTCAGGAGCTCTATGAAGCACAAGTCCCTGAGAA
C
AACCCCCTCGGCTCTCTGGTTATTACCGTCTCAGCCAGAGATTTAGATGCAGGATCGTTTGGGAAGGTA
TCT
TACGCCCTGTTTCAAGTCGATGACGTCAACCAACCCTTCGAAATAAACGCAATCACAGGAGAAATTC
GG
CTGAGAAAGGCTTTGGATTTTGAGGAAATTCAGTCTTATGACGTGGATGTTGAGGCTACAGATGGTGG
A
GGCCTATCAGGAAAATGCTCTTTAGTCGTCAGGGTCCTGGACGTGAATGACAATGCCCCTGAACTCACC
ATG
TCGTTCTTCATCAGCCTCATCCCAGAAAACTTACCAGAGATCACAGTGGCAGTTTTCAGTGTTTCAG
AT
GCAGACTCTGGACATAACCAACAGGTTATTTGTTCAATAGAGAACAATCTCCCCTTTCTACTAAGACC
T
TCCGTGGAGAATTTCTACACCCTGGTAACAGAAGGCGCGCTGGACAGAGAGAGCAGAGCCGAGTACAAC
ATC
ACTATCACGGTCACTGATTTGGGGACACCAAGGCTGAAAACCCAGCAGAGCATAACTGTGCAGGTCT
CC
GACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAG
C
CCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATCAACGCCCAGGTCACCTAC
TCG
CTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCTCTTCCCTGGTCTCCATCAACGCGGACAACGGCC
AC
CTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGTCTTTCGAGTTCCGCGTGGGCGCCACAGA
C
CGCGGCTCCCCGGCGTTGAGCAGCGAGGCGCTGGTGCGCTTGCTGGTGCTGGACGCCAACGACAACTCG
CCC
TTCGTGTTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGC
CG
GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCA
G
CTGCTCAAGGCCACGGAGCTCGGTCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGG
CTG
CTGAGCGAGCGAGACGCAGCCAAGCACAGGCTGGTGGTGCTTGTCAAGGACAATGGCGAGCCTCCGC
GC
TCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGA
G
GCGGCCCCGGCCCAAGCCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCG
TCG
CTCTTCCTCTTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGG
TG
GGTCGCTACTCGGTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGATGTGAGCGGCACCGGGACCCT
A
TCCCAGAGCTACCAGTACAAGGTGTGTCTGACGGGAGGCTCAGAAACAAATGAGTTCAAGTTCCTGAAG
CCG
ATTATGCCCAACTTCCCTCCTCAGGGCACTGAGAGAGAAATGGAAGAAACCCCCACCTCTCGGAATA
GC
TTCCCGTTCAGTTAA


Translation (658 aa):
MLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGRKFPELVLDKPLDREEQPQ
L
RLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEAQVPENNPLGSLVITVSARDLDAGSFGKV
S
YALFQVDDVNQPFEINAITGEIRLRKALDFEEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELT
M
SFFISLIPENLPEITVAVFSVSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYN
I
TITVTDLGTPRLKTQQSITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTY
S
LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLVLDANDNS
P
FVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATELGLFGVWAHNGEVRTAR
L
LSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVS
S
LFLFSVLLFVAVRLCRRSRAASVGRYSVPEGPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLK
P
IMPNFPPQGTEREMEETPTSRNSFPFS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser