NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38032.1 Public Mus musculus 19 Hspa12a 23 108 98 CCDS HistoryNCBI Gene:73442Re-query CCDS DB by CCDS ID:38032.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066285.5 ENSMUSP00000066860.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066285.5Link to Ensembl Protein Viewer:ENSMUSP00000066860.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066285Re-query CCDS DB by Protein ID:ENSMUSP00000066860
Original member Current member NCBI NM_175199.3 NP_780408.1 Accepted alive Link to Nucleotide Sequence:NM_175199.3Link to Protein Sequence:NP_780408.1Re-query CCDS DB by Nucleotide ID:NM_175199Re-query CCDS DB by Protein ID:NP_780408Link to BLAST:NP_780408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780408.1 675 Q8K0U4 675 100% 0 0

Chromosomal Locations for CCDS 38032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58799361 58799998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58800813 58800916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58804466 58804724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58805401 58805505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58806026 58806112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58809450 58809621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58821000 58821116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58822064 58822168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58825251 58825437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58827556 58827680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58828253 58828338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58860847 58860889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGCGGACAAGGAAGCTGGCGGTGGAGACGCCGGGCCCCGAGAAACAGCCCCCACATCTACATATTCCT
CTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTGAACGATGCTGA
CCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTAT
GCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCGGAGATGGGAAGGAGGTGACCCTGGTG
TTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGC
TGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAG
ATGAAACTCCACACCACAGGGGACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCA
AAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAGGAACTGAGTGACCA
GGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCA
GCCAAGCAGTTCATGAGAGAAGCTGCCTACCAGGCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCA
TCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCT
CAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGGCTAAG
GAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTG
AGCTGGAGGAAGGGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCA
GATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAGGTGGACCGTACGGATCCCTGGGA
GTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCA
AACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCG
AACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGC
GTGGAGCATGCATTGAGGAAGAGCAATGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGA
GCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCCGGGACCTGTT
TCAGAAGCCAGAGGTATCCACGGTCAAGTTCCTCTTTCTGGTGGGTGGCTTTGCAGAGGCGCCCCTTTTG
CAGCAGGCAGTGCAGACCGCTTTTGGCGACAAATGCAGGATCATCATCCCGCAGGATGTGGGCCTCACCA
TCCTCAAGGGCGCTGTCCTCTTCGGCCTGGACCCTGCCGTTATCAAGGTGCGCCGGTCCCCTCTCACCTA
CGGAGTAGGTGTGCTGAACCGCTACGTGGAAGGGAAGCACCCTCCCGAGAAGCTATTGGTCAAGGACGGC
ACACGCTGGTGCACCGACGTCTTCGACAAGTTCATCTCCGCCGACCAGTCTGTGGCTCTGGGGGAGCTGG
TCAAGCGTAGCTACACCCCGGCCAAGCCTTCCCAGCTGGTCATCATCATCAACATCTACAGCTCTGAGCA
TGATAACGTCAGCTTCATCACTGACCCAGGGGTGAAAAAGTGTGGCACGCTCCGCTTGGATCTCACGGGG
AGCGGCGGCACAGCGGTTCCCGCCCGCAGAGAGATCCAGACCATCATGCAGTTCGGGGACACTGAGATCA
AGGCCACGGCCGTCGACATAACCACCTCAAAGAGTGTCAAAGTGGGGATCGACTTCTTAAATTACTAA

Translation (675 aa):
MADKEAGGGDAGPRETAPTSTYSSPARSLGDTGITPLSPSHILNDADPVSEQQTFLVVVAIDFGTTSSGY
AYSFTKEPECIHVMRRWEGGDPGVSNQKTPTTILLTPERKFHSFGYAARDFYHDLDPSEAKQWLYLEKFK
MKLHTTGDLTMDTDLTAANGKKVKALEIFAYALQYFKEQALKELSDQAGSDFENSDVRWVITVPAIWKQP
AKQFMREAAYQAGLASPENSEQLIIALEPEAASIYCRKLRLHQMIELSSKAVVNGYSASDTVGAGFAQAK
EHVRRNRQSRTFLVENVIGEIWSELEEGDKYVVVDSGGGTVDLTVHQIRLPEGHLKELYKATGGPYGSLG
VDYEFEKLLCKIFGEDFIEQFKIKRPAAWVDLMIAFESRKRAAAPDRTNPLNITLPFSFIDYYKKFRGHS
VEHALRKSNVDFVKWSSQGMLRMSPDAMNALFKPTIDSIIEHLRDLFQKPEVSTVKFLFLVGGFAEAPLL
QQAVQTAFGDKCRIIIPQDVGLTILKGAVLFGLDPAVIKVRRSPLTYGVGVLNRYVEGKHPPEKLLVKDG
TRWCTDVFDKFISADQSVALGELVKRSYTPAKPSQLVIIINIYSSEHDNVSFITDPGVKKCGTLRLDLTG
SGGTAVPARREIQTIMQFGDTEIKATAVDITTSKSVKVGIDFLNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH