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Report for CCDS19014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19014.1 Public Mus musculus 4 Actrt2 23 108 98 CCDS HistoryNCBI Gene:73353Re-query CCDS DB by CCDS ID:19014.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060062.4 ENSMUSP00000050377.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060062.4Link to Ensembl Protein Viewer:ENSMUSP00000050377.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060062Re-query CCDS DB by Protein ID:ENSMUSP00000050377
Original member Current member NCBI NM_028513.3 NP_082789.1 Accepted alive Link to Nucleotide Sequence:NM_028513.3Link to Protein Sequence:NP_082789.1Re-query CCDS DB by Nucleotide ID:NM_028513Re-query CCDS DB by Protein ID:NP_082789Link to BLAST:NP_082789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082789.1 377 Q9D9L5 377 100% 0 0

Chromosomal Locations for CCDS 19014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154666544 154667677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGTTTAACCCACTGGTACTAGATTCTCCTTCTGTGATTTTTGACAACGGATCTGGACTCTGTAAGGCAG
GACTGTCTGGGGAGATTGGGCCCCGTCATGTCACCAGCTCTGTCGTGGGGTACCCGAAGTTCAAGGCGCC
CCCCACGGGAGCTAGTCAGAAGAAGTACTTTGTCGGGGAAGAAGCCCTGTACAAACAGGAGGCCTTGAGC
CTGCACTACCCCATTGACCGGGGTCTGGTCACGAGCTGGGACGATGTGGAGAAACTCTGGAGACATCTCT
TCGAATGGGAACTGGGTGTGAAGCCCTGCGAACGACCCGTGCTCGTGACGGAACCCTCCCTGAACCCCAG
GGAGAATCGCGAGAAGACGGCAGAGATGATGTTTGAGACCTTCGAGGTACCTGCCTTCTACCTGTCAGAC
CAGGCAGTGCTGGCGCTCTACTCCTCTGCCTGTGTCACAGGCCTGGTGGTGGACAGTGGGGATGGGGTCA
CCTGCACTGTCCCCATCTATGAAGGTTACTCCCTGCCTCACGCAGTCAGCAAGCTTTACGTGGCCGGCAA
AGACATCACAGAGCTCCTCACCCGGCTGCTGCTGGCCAGTGGACGAGCCTTTCCATGCCCACTGGAAAAG
GCCCTGGCGGATGACATCAAGGAGAAGCTGTGCTATGTGGCCCTGGAGCCTGAGGAGGAGCTGTCTCGGC
GGGCAGAAGATGTCTTGAGAGAGTACAAACTGCCCGACGGGAATGTCATTTACATCGGAGACCAGCTGTA
CCAGGCTCCTGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCA
TCTAACAGCATAACCAAGTGTGATGCTGACATACAGAAGACACTCTTTGGGGAGATTGTCTTGTCGGGGG
GAAGCACGCTGTTTCAGGGGCTGGATGACAGGCTCCTGAAAGAACTGGAACAGCTGGCTTCCAAGGGGGT
CCCCATCAAAATCACAGCGCCGCCCGACCGCTGGTTCTCTACGTGGATCGGGGCCTCCATTGTCACGTCT
CTGAGCAGCTTTAAGCAGATGTGGATCACTGCTGCAGACTTCAAAGAGTTTGGAGTGTCCGTGGTCCAGA
GGCGGTGCTTCTGA

Translation (377 aa):
MFNPLVLDSPSVIFDNGSGLCKAGLSGEIGPRHVTSSVVGYPKFKAPPTGASQKKYFVGEEALYKQEALS
LHYPIDRGLVTSWDDVEKLWRHLFEWELGVKPCERPVLVTEPSLNPRENREKTAEMMFETFEVPAFYLSD
QAVLALYSSACVTGLVVDSGDGVTCTVPIYEGYSLPHAVSKLYVAGKDITELLTRLLLASGRAFPCPLEK
ALADDIKEKLCYVALEPEEELSRRAEDVLREYKLPDGNVIYIGDQLYQAPEVLFSPDQLGTHGPGLAQMA
SNSITKCDADIQKTLFGEIVLSGGSTLFQGLDDRLLKELEQLASKGVPIKITAPPDRWFSTWIGASIVTS
LSSFKQMWITAADFKEFGVSVVQRRCF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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