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Report for CCDS22428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22428.1 Public Mus musculus 8 Ttc29 23 108 98 CCDS HistoryNCBI Gene:73301Re-query CCDS DB by CCDS ID:22428.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049395.14 ENSMUSP00000041919.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049395.14Link to Ensembl Protein Viewer:ENSMUSP00000041919.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049395Re-query CCDS DB by Protein ID:ENSMUSP00000041919
Original member Current member EBI ENSMUST00000109902.3 ENSMUSP00000105528.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109902.3Link to Ensembl Protein Viewer:ENSMUSP00000105528.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109902Re-query CCDS DB by Protein ID:ENSMUSP00000105528
Original member Current member NCBI NM_183096.3 NP_898919.3 Accepted alive Link to Nucleotide Sequence:NM_183096.3Link to Protein Sequence:NP_898919.3Re-query CCDS DB by Nucleotide ID:NM_183096Re-query CCDS DB by Protein ID:NP_898919Link to BLAST:NP_898919.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898919.3 471 Q80VM3-1 471 99.7877% 0 1

Chromosomal Locations for CCDS 22428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 78218794 78218885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78220750 78220833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78246099 78246322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78251723 78251908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78276743 78276955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78282302 78282387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78315673 78315764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78325469 78325592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78333554 78333782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78393071 78393137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78393665 78393683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGCTACCTTTCCCCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCCAGGCAGAAGCTACCAT
GCTCTTCAAAAAAAATCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACATAGATTATTACCTGGAACA
GAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTG
GACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGC
TCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCT
AGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATAT
AACAACCTGTATGCTCTGGCCTGTTATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTTCTACG
AACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACA
CATGGGACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAA
CTGACACACGGACGGCTCTGGAAGGATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAAGTCTCG
TGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCATCAAAATCCT
AATAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGGGAGGCTTCTTACTACCTG
GGCTTGGCCCACTTGGCTTCTGGAGAATATGAAACCGCACTAACAGTGCTGAATCGGTACAGTGAGATCT
CCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTATGAGGCTATCGCCAAGGCCCTGCAGAGCCA
AGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGC
CTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTT
CCGAGTACTTCCAACAAGCTTTCAGCACCGCGATGGAGCTCATGAAAACGGCGCTCATGGATGAAACCAA
AGTCCACTATGGGATAGCCAGAGCGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATCTGCCGAC
TCGAATGGCCTCAACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAG
GAGAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTC
TCCAGAAAATCAATAA

Translation (471 aa):
MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICV
DMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAEAAERKGYYEEVY
NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHE
LTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYL
GLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQS
LDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIESAD
SNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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