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Report for CCDS57052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57052.1 Public Mus musculus 17 Zfp942 23 108 98 CCDS HistoryNCBI Gene:73233Re-query CCDS DB by CCDS ID:57052.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074295.7 ENSMUSP00000073907.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074295.7Link to Ensembl Protein Viewer:ENSMUSP00000073907.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074295Re-query CCDS DB by Protein ID:ENSMUSP00000073907
Original member Current member EBI ENSMUST00000091879.11 ENSMUSP00000089494.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091879.11Link to Ensembl Protein Viewer:ENSMUSP00000089494.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091879Re-query CCDS DB by Protein ID:ENSMUSP00000089494
Original member Current member NCBI NM_001199048.1 NP_001185977.1 Accepted alive Link to Nucleotide Sequence:NM_001199048.1Link to Protein Sequence:NP_001185977.1Re-query CCDS DB by Nucleotide ID:NM_001199048Re-query CCDS DB by Protein ID:NP_001185977Link to BLAST:NP_001185977.1

Chromosomal Locations for CCDS 57052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 21928186 21929489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21930366 21930492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21932993 21933022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGAATGCTTCCCTGGTAAATGCTCCCAAGGGTCTGTTAAGATTCAAGGATGTGGCAGTGGACTTCTCAC
AGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTGGAGAATTACAA
CAATCTATTTTTTGTGGAGAATCTTTGCATTTTTCCTAAATATGAGAATGGCTTGGATCAAGACACACAG
CATATTGTTCACAAGCATGTAACTATCCAAAAGAAGTCTTATAAATATTATGAGCATGGCAAAATCATCC
AGGAATACACCCAAAGTGTACTTTACCAAGATAACTTCAGGGATACACATGTTGAGTCATCAAACGTAAA
CAGACATGAAACTGGAAACACCAGAGAACCTTGCAAATATAAAAATTGTGTAAACTGTTTAAATTTGTGT
TCTACCATTGGTCTAAATCAAGGACTCCACATAGGAAAGAAAGAACACAATGGGACAGTGCTTAATAAGG
TTTTTGACTCTAAACAAATACTTGGGCTGAAACAAACCAATAGTGGAAAGAAACCTTACAGATGTAGTGA
ATGTTCCAGATGCTTCACCAAGAAATGTAAGCTTAGACAACATCAGACAATTCATACTGGAGAGAAACCT
TACAAATGTAGTGAATGTGACAAATGCTTTTTTTACAAATACAGTCTTAGTATTCATCAGAGATTTCATA
CTAGTGAGAAACTTTACAAATGTAGTGAATGTGACAAATGCTTTACCTTTAAAAGTGTTCTTAGAATTCA
TCAGAGAATTCATACGGGAGAGAAACCATACAAATGTAGTAAATGTGAAAAATCTTTTACCCGGAAAAGC
AACCTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTATAAATGTAGTGAATGTGACAAATGCT
TTACCTTCAAAAATACTCATCGAATTCATCAGAGAATTCATACAGGAGAGAAACCGTACAAATGTAGTGA
ATGTGAAAAATCTTTTACCCGGAAAAGCCATCTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCC
TATAAATGTAGTGAATGTGACAAATGCTTTACCTACGAACACACTCTTAGTAATCATCAGAGAATTCATA
CAGGACAGAAGCCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCGAAAATGTAATCTTATTATTCA
TCAAAAAATTCATACAGGAGAAAAACCATATAAATGTAGTGAGTGTGACAAATGCTTTACCCACAAAGGC
GGTCTTAGTATTCATCAGATAACTCATACAGGAGAGAAGCCTTACAAATGTAGTGAATGCAACAAATGCT
TCACTCACAAAGGTGATCTTAGACGTCATCAGAGAATTCATTCTGGAGAGAAACCTTATAAATGTAGTGA
ATGTGACAAATGCTTTACCCGCAAATTCAGTCTTAGAAGTCATCAGAGAATTCATACATGA

Translation (486 aa):
MNASLVNAPKGLLRFKDVAVDFSQEEWECLDCAQRALYMDVMLENYNNLFFVENLCIFPKYENGLDQDTQ
HIVHKHVTIQKKSYKYYEHGKIIQEYTQSVLYQDNFRDTHVESSNVNRHETGNTREPCKYKNCVNCLNLC
STIGLNQGLHIGKKEHNGTVLNKVFDSKQILGLKQTNSGKKPYRCSECSRCFTKKCKLRQHQTIHTGEKP
YKCSECDKCFFYKYSLSIHQRFHTSEKLYKCSECDKCFTFKSVLRIHQRIHTGEKPYKCSKCEKSFTRKS
NLRIHQRIHTGEKPYKCSECDKCFTFKNTHRIHQRIHTGEKPYKCSECEKSFTRKSHLRIHQRIHTGEKP
YKCSECDKCFTYEHTLSNHQRIHTGQKPYKCSECDKCFTRKCNLIIHQKIHTGEKPYKCSECDKCFTHKG
GLSIHQITHTGEKPYKCSECNKCFTHKGDLRRHQRIHSGEKPYKCSECDKCFTRKFSLRSHQRIHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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