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Report for CCDS52473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52473.1 Public Mus musculus 8 Prr36 23 108 98 CCDS HistoryNCBI Gene:73072Re-query CCDS DB by CCDS ID:52473.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168386.8 ENSMUSP00000133114.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168386.8Link to Ensembl Protein Viewer:ENSMUSP00000133114.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168386Re-query CCDS DB by Protein ID:ENSMUSP00000133114
Original member Current member NCBI NM_207203.2 NP_997086.2 Accepted alive Link to Nucleotide Sequence:NM_207203.2Link to Protein Sequence:NP_997086.2Re-query CCDS DB by Nucleotide ID:NM_207203Re-query CCDS DB by Protein ID:NP_997086Link to BLAST:NP_997086.2

Chromosomal Locations for CCDS 52473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4210519 4211036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4212886 4215081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4215166 4215278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4215969 4216071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4216182 4216548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3297 nt):
ATGGACAAGAGGGATAGCGTCAAATCAGGAACTGCCCCGCGAATGCCGTCTTCACGACCCCCTGGCCTTC
TGACCCCTAGGCCTCCTTCTGGGTCCGCTCGACCTCCTCCCCCTGTGACCACTGCTGCCCTTCGAGTCTT
GGAAGCAAACGGAGCTATGGGGCGAAGGTCCCTGGTGGAGCGAGCCCCAGGCGTCTGCAAAGCCGCTCTT
CCACAGACCAGCAAAGCCGCTCTTCCACAGACCAGCAAAGCCGCTCTTCCACAGACCAGCAAAGCAGCTC
TTCCACAGACCAGCAAAGCAGCTCTTCCACAGACCACTATTCACGGGGCACCAGCGCGCAGTGCTGGGGC
AGGTCCTCGTAGCCCAGCCAACAGGCCCCCAGCTTCTGGGAAAGGAGAGAGGGCCCCTATGAAGACCCCT
GGCCAGGGCTCTATTTCTAGCCCCGGGCGTGCCAGCAGTGGGATTGCCAGACCAGGCCCTGTTGTCCAGA
AGAGACTCCAACCTCCGACTAAGGAACCCTCGGCCAGAGGTAAAACACCAGAGACGCCCAAAAGGAATAC
TCTGAACTCTGGAACACGAAGAGTTTTGTCTGCAGATTCTTTAGGGCCCACCTCAGGAGCCCCCTCCCCT
GCCATCACCCGTCGGTCCAGGGCTCCAGCTACAGAGGTGGGACTTCCTCAACCAGCTCCCAGTGCCAGAC
AGCGTCCTCTGACCACCGAGGCAGCCAGGAAACCTGGGAGCAGTGCTTCTGAACCCAGTGCCACGGAGCT
GAGCCCAGCCTTTAGGAGACGCTCTGTTGCTGGTGGCAGCCTGCAAAAGCCGGTCTCACGTTCCCTGATC
CCCAGTGCTACTCCTCAGCTCTCCCCATCCCGCTCCGGGGTCTCACCACGTGTAACCCCACGGGCTCCTG
CGCATACCTCGCAGCTCAAGTCGAAAGGGCAGCAAGCTCTGCACCCAACCCAGACCACAGTCCCAAGGAA
GAACAAGCCCTCTGTACAGAGCCTGATTCCTGCTTCATCTTTAGTCACGCCCACTCCACCTGGTGCTTCC
TCTGTCCAGGGCCCAGATGATCCCTCGCAAACCACACTTCCTCCCTCTCCTCCCACCACCCCGCCTCTAC
CAGCTTCTCTTCAACTACTCCAACCACAAGCCTCTTCACAGGCAGTGCCCCATTCACAGTCTGGACAAGG
CTCACCATCACCTCCGCCTCTTTCTCTGCAGAACCTCCCCTCTACACCAGCCACACCCCCATTGCTAGCT
CCACCCACATCTCTGGATACTGAAGAGGCCTCTGACTCACCCCCACCGAGAGCTGTAATCTCTTCATCGC
CCCCTCCCCTTATACAGAATATGCCCCCTAACCAGGCTTCTTCAGCAACGCTCCCTCAGGAGACTCTCTC
GGCCATGCCTTTCTCACCTGCTCCTCTATCTCTAGCCTCGTCTCCTCCACAACTCCTTCCTTCCCCGCCA
ATTTCCCCGCAGAATTTGCCCACTTCCCTTGTCACGTCTTCTCAGTTGCCTCTCTCCACTCCTTTCCGGG
CCAACTTTTCTGAGTCTCCTCCCCTTCCCCGGGCCACGCTCGCTAATCGAACCACGCCGTCTTTGCAAGA
TCCTCTGTTTCTGGCCATTTCTCCTCCAGTTTCTTCGTCTACCTCCATCTCACCACCTCTGCCTACCTCT
TCCGTGGTCACGCCTCCTCTGAGGCTCCCACTTTCTCAGACTTTGCCCACTTCACAGGCCTCTTTGTTGA
CCTTGCCGCCCTCACTGGCCTCCTCACCCCAGCCGGCCACGCCTCCTCCTTTGGCCTTGTCCCCTCTATC
CACCCAACTCTCTACTGGCTCGCCCTCTTTGCAGGCCTCTCCTTCTTTCTTGCCTACCCCCCCTATGCAG
CCACGCGCTCTACCCTCGCCTTCTTTGCAGGCACCTCCTGTTACATACCCCTTGCCTCTTTCCTCACCCC
CTGCCTCACCACCTCTGCCCGCTCTTCTCTCCCCTCCTGCCTCACCTCCTCTGGAGAGCCCTCTTTCTCC
CTCAGCCTCACCCTCGTCTCCCTTAGCAACTCCCCCTCCAGAAGCCCCACCTTCACTGGGCTCACCCACT
CTTTCACCCCTGGCCACGCCCCCTCCGCAAACCCCACCTCTGGCTTTTCCCCCTCTGCCAGCTTCCACCT
CTTCCCTGGACACAGCCACATGTTTTCCACAGGGTCCTCTCTTGGCTTTGCCTCCTCTACAAACCTCTCC
TTCTCCTCTGACAATACCCTGTCCGCAGACTCCACCTTCTCTGGCCTTGCCCTCCCTGCAGTCTCCCTCC
TCCCCATTGGCCACAGCCACACCCCCCCTACAGATTCCCCTTGTGGTTTTACCTACTTTACAGACCCCTC
CTTCTCCCCTGACCACTTTCCCTCCGGGGGTCCCGCCTGGCCTGACCTCGCCGGTTGTTCAGCCTCCTTC
TCCTCCTGCCTCACCACCACTACAAGCCCCTCGTCGACCCCCAACCCCGGGTCCAGATGTCCCTATCACA
GGTCCACGGCTGACCCTGGCGCTGGCCCCTGCCCCGCCCCCGCCCCCCTCGCGAAGCCCGTCCAGTACGC
TGAGTGGCCCGGACCTGGCAGGTCACAGCAGTAGTGCCACGAGCACACCAGAGGAGCTCCGCGGCTACGA
TAGTGGGCCCGAGGGCTGTCCTACAATCTCCCCGGCCCCGGACGCGGACCTAGCTGCCTGCCACCCCGCT
TCCTGGAGTCGAAGTTCTGCTCCACAGTTAGCAGTACGCAGCACTCCAGGAGTTCCCCTGCCATGGCCTC
CCACTGCTGGCCCAGGTTCCTCTGATGGCCTGTGCACCATCTACGAATCTGAAGGACCAGAGTCGGTGGC
CCCCACCCCGGGATCCCTAGATGTGGAGCCAGAACCAATGCCTGGCTCTGGCAGTGCGAAGGTGACTGCT
GCAGACTGTGCAGGAGCATCCTCAAGAAGCCCAAAGTCCGCTCGCCTTGGCGAGCTGCCCCTGGGGGCCC
TTCAGGCGAGCGTTGTGCAGCACCTGCTAAGCCGGACACTGCTGCTAGCAGCTGCAGAAGGTGCAGCTGT
GGGCTGCGAAGGCAGTTCAGGAGGCTCAGGGGTGGGTGGTGTCTCGGGAGGATCCCGGGCTCCGCTTAGC
GATGCTGAATTGGGCCGCTGGGCCGAATTGCTGTCTCCCTTGGACGAGTCTCGTGCCAGCATCACTTCGG
TCACCAGCTTCTCCCCAGATGATGTGGCCTCCCCACAGGGTGACTGGACTGTGGTGGAAGTGGAGACTTT
TCATTGA

Translation (1098 aa):
MDKRDSVKSGTAPRMPSSRPPGLLTPRPPSGSARPPPPVTTAALRVLEANGAMGRRSLVERAPGVCKAAL
PQTSKAALPQTSKAALPQTSKAALPQTSKAALPQTTIHGAPARSAGAGPRSPANRPPASGKGERAPMKTP
GQGSISSPGRASSGIARPGPVVQKRLQPPTKEPSARGKTPETPKRNTLNSGTRRVLSADSLGPTSGAPSP
AITRRSRAPATEVGLPQPAPSARQRPLTTEAARKPGSSASEPSATELSPAFRRRSVAGGSLQKPVSRSLI
PSATPQLSPSRSGVSPRVTPRAPAHTSQLKSKGQQALHPTQTTVPRKNKPSVQSLIPASSLVTPTPPGAS
SVQGPDDPSQTTLPPSPPTTPPLPASLQLLQPQASSQAVPHSQSGQGSPSPPPLSLQNLPSTPATPPLLA
PPTSLDTEEASDSPPPRAVISSSPPPLIQNMPPNQASSATLPQETLSAMPFSPAPLSLASSPPQLLPSPP
ISPQNLPTSLVTSSQLPLSTPFRANFSESPPLPRATLANRTTPSLQDPLFLAISPPVSSSTSISPPLPTS
SVVTPPLRLPLSQTLPTSQASLLTLPPSLASSPQPATPPPLALSPLSTQLSTGSPSLQASPSFLPTPPMQ
PRALPSPSLQAPPVTYPLPLSSPPASPPLPALLSPPASPPLESPLSPSASPSSPLATPPPEAPPSLGSPT
LSPLATPPPQTPPLAFPPLPASTSSLDTATCFPQGPLLALPPLQTSPSPLTIPCPQTPPSLALPSLQSPS
SPLATATPPLQIPLVVLPTLQTPPSPLTTFPPGVPPGLTSPVVQPPSPPASPPLQAPRRPPTPGPDVPIT
GPRLTLALAPAPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGCPTISPAPDADLAACHPA
SWSRSSAPQLAVRSTPGVPLPWPPTAGPGSSDGLCTIYESEGPESVAPTPGSLDVEPEPMPGSGSAKVTA
ADCAGASSRSPKSARLGELPLGALQASVVQHLLSRTLLLAAAEGAAVGCEGSSGGSGVGGVSGGSRAPLS
DAELGRWAELLSPLDESRASITSVTSFSPDDVASPQGDWTVVEVETFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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