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Report for CCDS29329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29329.1 Public Mus musculus 18 Tcf4 23 108 98 CCDS HistoryNCBI Gene:21413Re-query CCDS DB by CCDS ID:29329.1Re-query CCDS DB by GeneID:21413See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078486.12 ENSMUSP00000077577.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078486.12Link to Ensembl Protein Viewer:ENSMUSP00000077577.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078486Re-query CCDS DB by Protein ID:ENSMUSP00000077577
Original member Current member EBI ENSMUST00000114980.7 ENSMUSP00000110631.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114980.7Link to Ensembl Protein Viewer:ENSMUSP00000110631.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114980Re-query CCDS DB by Protein ID:ENSMUSP00000110631
Original member Current member EBI ENSMUST00000114985.9 ENSMUSP00000110636.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114985.9Link to Ensembl Protein Viewer:ENSMUSP00000110636.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114985Re-query CCDS DB by Protein ID:ENSMUSP00000110636
Original member Current member NCBI NM_001361127.1 NP_001348056.1 Accepted alive Link to Nucleotide Sequence:NM_001361127.1Link to Protein Sequence:NP_001348056.1Re-query CCDS DB by Nucleotide ID:NM_001361127Re-query CCDS DB by Protein ID:NP_001348056Link to BLAST:NP_001348056.1
Original member Current member NCBI NM_013685.2 NP_038713.1 Accepted alive Link to Nucleotide Sequence:NM_013685.2Link to Protein Sequence:NP_038713.1Re-query CCDS DB by Nucleotide ID:NM_013685Re-query CCDS DB by Protein ID:NP_038713Link to BLAST:NP_038713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348056.1 670 Q60722-1 670 100% 0 0
NP_038713.1 670 Q60722-1 670 100% 0 0

Chromosomal Locations for CCDS 29329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 69347299 69347370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69349072 69349144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69461862 69461923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69465351 69465447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69519965 69520026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69564034 69564163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69564635 69564684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69633577 69633682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69636831 69636964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69642883 69643015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69651222 69651289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69652394 69652472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69654961 69655037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69657747 69657950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69675699 69675834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69677967 69678129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69681569 69681798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69682683 69682819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGCATCACCAACAGCGAATGGCTGCCTTAGGGACGGACAAAGAGCTGAGTGATTTACTGGATTTCAGTG
CGATGTTTTCGCCTCCTGTAAGCAGTGGGAAAAATGGACCAACTTCTTTGGCGAGTGGACATTTCACTGG
CTCAAATGTAGAAGACAGAAGTAGCTCAGGGTCCTGGGGAACTGGAGGCCATCCAAGCCCGTCCAGGAAC
TATGGAGATGGGACTCCCTATGACCACATGACTAGCAGGGATCTTGGGTCACATGACAATCTCTCTCCAC
CTTTTGTCAATTCCAGAATACAAAGTAAAACAGAAAGGGGCTCATACTCATCTTATGGGAGAGAAAACGT
TCAGGGTTGCCACCAGCAGAGTCTCCTCGGAGGGGACATGGATATGGGCAATCCAGGAACCCTTTCGCCC
ACCAAACCTGGCTCCCAGTACTATCAGTATTCAAGCAATAATGCCCGCCGGAGGCCTCTTCACAGTAGTG
CCATGGAGGTACAGACAAAGAAAGTCCGAAAAGTTCCTCCGGGTTTGCCGTCTTCAGTCTACGCTCCTTC
AGCCAGCACTGCCGACTACAACAGGGACTCGCCAGGCTATCCTTCCTCCAAGCCAGCAGCCAGCACTTTC
CCTAGCTCCTTCTTCATGCAAGATGGCCATCACAGCAGCGACCCTTGGAGCTCCTCCAGCGGGATGAATC
AGCCCGGCTACGGAGGGATGCTGGGCAATTCTTCTCATATCCCACAGTCCAGCAGCTACTGTAGCCTGCA
TCCACATGAACGTTTGAGCTATCCATCCCACTCCTCGGCAGACATCAACTCCAGTCTTCCTCCGATGTCC
ACGTTCCATCGTAGTGGCACAAACCATTACAGCACCTCTTCCTGCACACCCCCTGCCAACGGAACAGACA
GTATAATGGCAAACAGAGGAACTGGGGCAGCAGGCAGCTCGCAGACTGGAGACGCTCTAGGGAAAGCCCT
AGCTTCGATCTATTCTCCTGACCACACGAACAACAGCTTTTCCTCCAATCCTTCAACTCCTGTGGGCTCC
CCTCCTTCACTCTCAGCAGGCACAGCTGTTTGGTCTAGAAATGGAGGACAGGCCTCGTCATCTCCCAATT
ATGAAGGACCCTTGCACTCACTGCAAAGCCGAATCGAAGACCGTTTGGAAAGACTGGACGATGCGATTCA
TGTTCTCCGGAACCACGCAGTGGGCCCGTCCACAGCTGTGCCTGGTGGCCATGGGGACATGCATGGGATC
ATGGGACCCTCCCACAACGGAGCGATGGGTAGCCTGGGCTCAGGGTACGGAACTAGTCTTCTCTCAGCCA
ACAGACACTCGCTCATGGTTGGGGCCCACCGTGAAGATGGCGTGGCTCTGAGAGGCAGCCATTCTCTCCT
GCCAAACCAGGTTCCGGTCCCACAACTTCCGGTCCAGTCTGCAACTTCCCCTGACTTGAACCCACCCCAA
GACCCTTACAGAGGGATGCCACCAGGCCTCCAGGGCCAGAGCGTGTCTTCTGGTAGCTCTGAGATCAAAT
CCGACGACGAGGGCGATGAGAACCTGCAAGACACAAAATCTTCTGAGGACAAGAAATTAGATGACGACAA
GAAGGATATCAAATCAATTACTAGGTCAAGATCTAGCAATAACGATGATGAGGACCTGACCCCAGAGCAG
AAGGCTGAGCGCGAGAAGGAACGGAGGATGGCCAATAATGCCCGTGAGCGCCTGAGGGTCCGAGATATCA
ACGAGGCTTTCAAGGAGCTTGGCCGTATGGTGCAGCTCCACCTGAAGAGCGACAAGCCCCAGACCAAGCT
CCTGATTCTCCACCAGGCCGTGGCTGTCATCCTCAGCCTGGAGCAGCAAGTTCGAGAAAGGAATCTGAAC
CCGAAAGCTGCCTGTCTGAAAAGAAGGGAGGAAGAGAAGGTGTCCTCAGAGCCTCCCCCACTCTCCTTGG
CTGGCCCACACCCTGGGATGGGAGACGCAGCGAATCACATGGGACAGATGTGA

Translation (670 aa):
MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGHFTGSNVEDRSSSGSWGTGGHPSPSRN
YGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQSKTERGSYSSYGRENVQGCHQQSLLGGDMDMGNPGTLSP
TKPGSQYYQYSSNNARRRPLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPAASTF
PSSFFMQDGHHSSDPWSSSSGMNQPGYGGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMS
TFHRSGTNHYSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGS
PPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAVPGGHGDMHGI
MGPSHNGAMGSLGSGYGTSLLSANRHSLMVGAHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQ
DPYRGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQ
KAEREKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLN
PKAACLKRREEEKVSSEPPPLSLAGPHPGMGDAANHMGQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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