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Report for CCDS26004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26004.1 Public Mus musculus 12 Plek2 23 108 98 CCDS HistoryNCBI Gene:27260Re-query CCDS DB by CCDS ID:26004.1Re-query CCDS DB by GeneID:27260See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021544.7 ENSMUSP00000021544.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021544.7Link to Ensembl Protein Viewer:ENSMUSP00000021544.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021544Re-query CCDS DB by Protein ID:ENSMUSP00000021544
Original member Current member NCBI NM_013738.3 NP_038766.1 Accepted alive Link to Nucleotide Sequence:NM_013738.3Link to Protein Sequence:NP_038766.1Re-query CCDS DB by Nucleotide ID:NM_013738Re-query CCDS DB by Protein ID:NP_038766Link to BLAST:NP_038766.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038766.1 353 Q9WV52 353 100% 0 0

Chromosomal Locations for CCDS 26004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 78889180 78889307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78889912 78889990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78892129 78892212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78894077 78894178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78894388 78894575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78894873 78894964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78896132 78896313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78900055 78900219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78906891 78906932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGGACGGCGTGCTCAAGGAAGGCTTCCTCGTCAAGAGGGGCCACATTGTCCACAACTGGAAGGCAC
GATGGTTCATCCTTCGGCAGAACACGCTCCTGTATTACAAGCTAGAGGGTGGCCGGCGAGTAACCCCGCC
CAAGGGGAGGATTGTCCTTGATGGCTGCACCATCACCTGCCCCTGCCTGGAGTATGAAAACCGGCCGCTC
CTCATTAAACTGAAGACCCGAACTTCCACTGAGTACTTCCTGGAAGCCTGTTCTCGAGAGGAGAGAGACT
CCTGGGCCTTTGAGATAACAGGGGCTATCCATGCAGGGCAGCCAGGGAAGATCCAACAACTCCACATACT
GAAGAACTCCTTCAAGTTGCCCCCACACATCAGCCTGCATCGAATTGTGGACAAGATGCATGACACCAGC
ACTGGAATCCGGCCAAGCCCCAACATGGAGCAAGGAAGCACCTACAAAAAGACCTTTCTGGGCTCCTCCC
TGGTGGACTGGCTCATCTCCAGCAACTTTGCAGCCAGCCGTCTGGAGGCAGTGACCCTGGCCTCCATGCT
TATGGAAGAGAACTTTCTCAGGCCAGTAGGGGTCCGGAGCATGGGAGCTATTCGCTCTGGCGATCTGGCT
GAGCAGTTTCTGGATGACTCCACAGCCCTGTATACTTTTGCTGAAAGCTACAAGAAGAAGGTAAGCTCCA
AGGAGGAAATCAGTCTCAGCACCATGGAGTTAAGTGGCACAGTGGTCAAACAAGGCTACCTATCCAAGCA
GGGGCACAAGAGGAAAAACTGGAAGGTGCGCAGATTTGTTCTGAGGAAGGACCCAGCTTTCCTGCACTAC
TATGACCCTTCCAAAGAAGAGAACAGGCCAGTAGGTGGGTTTTCTCTTCGTGGTTCCCTTGTGTCTGCTC
TGGAGGATAATGGTGTTCCTACTGGAGTTAAAGGGAATGTCCAAGGAAATCTCTTCAAAGTGATTACGAA
GGATGACACACACTATTATATCCAGGCCAGCAGCAAGGCTGAGCGAGCAGAATGGATTGAAGCTATCAAG
AAGCTAACATGA

Translation (353 aa):
MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLLYYKLEGGRRVTPPKGRIVLDGCTITCPCLEYENRPL
LIKLKTRTSTEYFLEACSREERDSWAFEITGAIHAGQPGKIQQLHILKNSFKLPPHISLHRIVDKMHDTS
TGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLA
EQFLDDSTALYTFAESYKKKVSSKEEISLSTMELSGTVVKQGYLSKQGHKRKNWKVRRFVLRKDPAFLHY
YDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK
KLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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