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Report for CCDS4250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4250.1 Public Homo sapiens 5 PCDHB8 24 110 108 CCDS HistoryNCBI Gene:56128Re-query CCDS DB by CCDS ID:4250.1Re-query CCDS DB by GeneID:56128See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239444.4 ENSP00000239444.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239444.4Link to Ensembl Protein Viewer:ENSP00000239444.2Re-query CCDS DB by Nucleotide ID:ENST00000239444Re-query CCDS DB by Protein ID:ENSP00000239444
Original member Current member NCBI NM_019120.5 NP_061993.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019120.5Link to Protein Sequence:NP_061993.3Re-query CCDS DB by Nucleotide ID:NM_019120Re-query CCDS DB by Protein ID:NP_061993Link to BLAST:NP_061993.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061993.3 801 Q9UN66 801 100% 0 0

Chromosomal Locations for CCDS 4250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141178035 141180440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGAGGCCAGCGGGAAGCTCATTTGCAGACAAAGGCAAGTCCTTTTTTCCTTTCTCCTTTTGGGCTTAT
CT
CTGGCGGGCGCGGCGGAACCTAGAAGCTATTCTGTGGTGGAGGAAACTGAGGGCAGCTCCTTTGTCAC
C
AATTTAGCAAAGGACCTGGGTCTGGAGCAGAGGGAATTCTCCAGGCGGGGGGTTAGGGTTGTTTCCAGA
GGG
AACAAACTACATTTGCAGCTCAATCAGGAGACCGCGGATTTGTTGCTAAATGAGAAATTGGACCGTG
AG
GATCTGTGCGGTCACACAGAGCCCTGTGTGCTACGTTTCCAAGTGTTGCTAGAGAGTCCCTTCGAGTT
T
TTTCAAGCTGAGCTGCAAGTAATAGACATAAACGACCACTCTCCAGTATTTCTGGACAAACAAATGTTG
GTG
AAAGTATCAGAGAGCAGTCCTCCTGGGACTGCGTTTCCTCTGAAGAATGCTGAAGACTTAGATATAG
GC
CAAAACAATATTGAGAACTATATAATCAGCCCCAACTCCTATTTTCGGGTCCTCACCCGCAAACGCAG
T
GATGGCAGGAAATACCCAGAGCTGGTGCTGGACAAAGCGCTGGACCGAGAGGAAGAAGCTGAGCTCAGG
TTA
ACACTCACAGCACTGGATGGTGGCTCTCCGCCCAGATCTGGCACTGCTCAGGTCTACATTGAAGTTG
TC
GATGTCAATGATAATGCCCCTGAATTTGAGCAGCCTTTCTATAGGGTGCAGATCTCTGAGGACAGTCC
A
ATAAGCTTCCTGGTTGTGAAGGTCTCTGCCACGGATGTAGACACAGGAGTCAACGGAGAGATTTCCTAT
TCA
CTTTTCCAAGCTTCAGATGAGATAAGCAAAACTTTTAAGGTCGATTTCTTGACAGGAGAAATTCGAC
TA
AAGAAACAACTTGATTTCGAAAAATTTCAGTCCTATGAAGTCAATATCGAGGCGAGAGATGCTGGAGG
C
TTTTCTGGAAAATGCACCGTTCTGATTCAAGTGATAGATGTGAACGACCATGCCCCAGAAGTTACCATG
TCT
GCATTTACCAGCCCAATACCTGAGAATGCGCCTGAAACTGTGGTTGCACTTTTCAGTGTTTCAGACC
TT
GATTCAGGAGAAAATGGGAAAATAAGTTGCTCCATTCAGGAGGATCTACCCTTCCTCCTGAAATCTTC
T
GTGGGGAACTTTTACACCCTACTAACAGAGACACCACTAGACAGAGAAAGCAGAGCCGAGTACAACGTC
ACT
ATCACCGTCACTGACTTAGGGACACCCAGGCTGACAACACATCTCAATATGACCGTGCTGGTGTCGG
AC
GTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCC
C
GCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCG
CTG
CTGCCGCCCCAGGATCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACACAGACAACGGCCACC
TG
TTCGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGGGTGGGCGCTTCAGACCG
C
GGCTCCCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCC
TTC
GTGCTGTACCCGCTGCAGAATGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGG
GC
TACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCT
G
CTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTG
CTG
AGCGAGCGCGACGCGGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGTGCT
CG
GCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTTCCGGAGGC
T
GCCCCAGCCCAGGGCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCG
CTC
TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCTGCTGTGTAGGAGGAGCAGGGCGGCCTCGGTGG
GT
CGCTGCTCAGTGCCTGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGGGGCACCGGGAGCCTGTC
T
CAGAACTATCAGTACGAGGTGTGCCTGGCAGGAGGCTCAGGGACGAATGAGTTCCAGCTCCTGAAACCA
GTA
TTACCTAATATTCAGGGCCATTCTTTTGGGCCAGAAATGGAACAAAACTCTAACTTTAGGAATGGCT
TT
GGTTTCAGCCTTCAGTTAAAGTAA


Translation (801 aa):
MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVSR
G
NKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDINDHSPVFLDKQML
V
KVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFRVLTRKRSDGRKYPELVLDKALDREEEAELR
L
TLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYRVQISEDSPISFLVVKVSATDVDTGVNGEISY
S
LFQASDEISKTFKVDFLTGEIRLKKQLDFEKFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTM
S
AFTSPIPENAPETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNV
T
ITVTDLGTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS
L
LPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDANDNSP
F
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL
L
SERDAAKQRLVVLVKDNGEPPCSATATLHVLLVDGFSQPYLPLPEAAPAQGQADSLTVYLVVALASVSS
L
FLFSVLLFVAVLLCRRSRAASVGRCSVPEGPFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQLLKP
V
LPNIQGHSFGPEMEQNSNFRNGFGFSLQLK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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