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Report for CCDS92238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92238.1 Public Homo sapiens 17 LOC728392 24 110 108 CCDS HistoryNCBI Gene:728392Re-query CCDS DB by CCDS ID:92238.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 92238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000568641.2 ENSP00000499042.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000568641.2Link to Ensembl Protein Viewer:ENSP00000499042.1Re-query CCDS DB by Nucleotide ID:ENST00000568641Re-query CCDS DB by Protein ID:ENSP00000499042
Original member Current member NCBI NM_001162371.3 NP_001155843.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162371.3Link to Protein Sequence:NP_001155843.1Re-query CCDS DB by Nucleotide ID:NM_001162371Re-query CCDS DB by Protein ID:NP_001155843Link to BLAST:NP_001155843.1

Chromosomal Locations for CCDS 92238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5500597 5500956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGCTGACGGGCTCTTTCGGCGCAGACCCTGGGGTCTCGAGCAGATTCGCCCGGACCCCGAGTCCGAAG
GCCTGTTTGACAAGCCTCCCCCGGAAGACCCTCCCGCTGCCCGCGGGCCCAGGTCGGCGTCGGCCGCGGG
CAAGAAGGCTGGTCGGCGCGCGGGCGGGAGGGCGCAGGGGGGCCGCGCCGGGCAGCCCCCGAAGGCCGCA
TCGCGCCCCCCGCCCAAGAAGGAGGCGCCTCCACTGGACGAGGGCTGCTATCTCGACCATTTTCCGCACC
TCTCCATCTTCATCTACGCAGCCATCGCCTTCTCCATCACCTCCTGCATCTTTACCTATATCCATTTACA
GCTTGCCTGA

Translation (119 aa):
MADGLFRRRPWGLEQIRPDPESEGLFDKPPPEDPPAARGPRSASAAGKKAGRRAGGRAQGGRAGQPPKAA
SRPPPKKEAPPLDEGCYLDHFPHLSIFIYAAIAFSITSCIFTYIHLQLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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