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Report for CCDS50180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50180.1 Public Mus musculus 17 Wdr43 23 108 98 CCDS HistoryNCBI Gene:72515Re-query CCDS DB by CCDS ID:50180.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047086.9 ENSMUSP00000048337.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047086.9Link to Ensembl Protein Viewer:ENSMUSP00000048337.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000047086Re-query CCDS DB by Protein ID:ENSMUSP00000048337
Original member Current member NCBI NM_175639.1 NP_783570.1 Accepted alive Link to Nucleotide Sequence:NM_175639.1Link to Protein Sequence:NP_783570.1Re-query CCDS DB by Nucleotide ID:NM_175639Re-query CCDS DB by Protein ID:NP_783570Link to BLAST:NP_783570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783570.1 677 Q6ZQL4 677 100% 0 0

Chromosomal Locations for CCDS 50180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71616261 71616485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71625353 71625490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71626773 71626894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71630161 71630281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71632005 71632141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71633624 71633726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71636557 71636621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71638309 71638480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71640234 71640320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71641287 71641418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71642705 71642833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71648773 71648859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71650017 71650048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71650568 71650631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71652781 71652894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71653453 71653522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71657341 71657390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71657476 71657661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCGGCCGGAGGCGGCGGTAGCTACGACCCCTTGGCCCCGGCGGGGGTCCCCTGCGCCTTCTCGCCGG
ACAGTCAAGCCTACTTCGCTTTAGCCTCTAGTGACGGTCAGCTGCGAGTATGGGAGACCGCCAACAACCG
GCTGCACCAGGAGTACGTGCCTTCCGCGCACCTCAGCGGTACCTGCACCTGCCTGGCCTGGGCGCCAGCA
CGGCTGCAGGCCAAGGAAAGTCATCAAAGGAAAAAAAGGAAATCGGAAGTTACAGGAACAAAGGACCAGG
CTGACCTGTTGGCTCTTGGCACGGCAGTTGGTAGCATTTTATTGTATAGTACAGTAAGAGGAGAGTTGCA
CAGTAAATTAACAAGTGGTGGGCATGAAAACAGAGTGAATTGCATACAGTGGCATCAAGACAATGACTGC
TTATATAGTTGTTCAGATGATAAGTATATTGTGGAGTGGAGTACACAGACATGCAAAGTAAAGTGCAAAT
GGAAAGGAGACAATAGCAGCGTCAGTTCCCTGTGTATCAGCCCAGATGGAAAGATGTTACTTTCAGCTGG
TCGAACAATCAAACTATGGGTTTTGGAGACCAAAGAAGTCTACAGACACTTCACAGGACATGCGACACCT
GTTTCGTCGCTTAGGTTCACGACCATCAGACCTAATGAGAGCCAGCCTTCTGATGGGATTACAGGCCTTT
ATTTCTTGTCTGGAGCCGTACACGACCGATTACTTAATGTCTGGCAGGTCCGGTCAGAGAACAAGGAGAA
GAGTGCAGTGATGTCTTTTACAGTCACAGACGAGCCTGTCTATGTTGACTTGACTTTGTCAGAAAACAAA
GAAGAGCCTGTCAAGTTAGCTGTTGTTTGCAGAGATGGTCAAGTTCATCTTTTTGAACACATATTAAATG
GACATTGCAAAAAGCCCTTGACTTCAAATTGCACAATCCAGATCGCAACACCTGGAAAGGGCAAGAAAGT
AACACCAAAACCCATCCCTATTCTAGCAGCTAGCTTTTGCTTAGACAAAATGTCCTTATTGCTGGTGTAT
GGAAATTGGTTTCAGCCTACCATTGAGCGAGTGGCTTTGAACTCCAAAGATACTCATATATGTTTGGAAA
GAGATATTTCAAATTGCTGGGCTCCAACAGTAGAAACTGCTATAACCAAGGTAAAAACACCAGTAATGAA
TTCTGAAGCAAAAGTTTTGGTGCCCGGGATTCCTGGACATCATGCGCCAATCAAGCTGCCGCCCGCCCAG
CCCAAGGAGGCCGAGAACAAGAGGAAATTGGGCAGTACTGAGGCTACCATCGAGGAGCGCCTTGGTGCCA
TGGACCTAGATAGAAAAGGAAGGAAGGACGACCTTCAGACAAACAGCTTTGCAGTCCTCCTTACACAGGG
CTTAGAAAGCAATGATTTTGAAATATTAAACAAAGTGCTTCAAACTAAGAATGTAAACCTAATAAAGAGG
ACTGTGCTGAGGATACCGTTGCGTGTTGTTATTCCACTGTTGCAAGAGCTTACGAAGAGGTTACAGGGAC
ATCCCAATAGTGCTGCTTTAATGATTCAGTGGCTGAAGTGTGTGCTGACGATCCATGCATCATACCTATC
TACGTTGCCTGACCTAGTAGAGCAGCTGGGAACACTCTACCAGCTGATGGAAAGCAGAGTCAAAACTTTC
CAGAAACTCTCAAACCTGCATGGAAAACTCATTCTTCTCGTCACGCAAGTTACAGCATCAGAAAAATCGA
AAAAAATGACCTCTCCCGGACAGAAGGCAAAATTGGTGTATGAAGAAGAGTCTTCTGAGGAGGAGTCTGA
CGATGAGGTTCCAGAGAAGGATTCTGATGATAATTGGGACGAAGATGAAGACAAAGACAGTGAAAAAGAT
GAGGGCGTTGATGAAGACAATGAGGAGGAAGATGAGGACATGGAAGACAAAGAAGAGAATGAGGAGGACA
GAGAAGTGTCAAGTGAAAAAGAATTAAATGGAGATTCGGATTTAGATCCTGAAAACGAGAGTGAAGAAGA
ATGA

Translation (677 aa):
MAAGGGGSYDPLAPAGVPCAFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPA
RLQAKESHQRKKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQWHQDNDC
LYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATP
VSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSENK
EEPVKLAVVCRDGQVHLFEHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSLLLVY
GNWFQPTIERVALNSKDTHICLERDISNCWAPTVETAITKVKTPVMNSEAKVLVPGIPGHHAPIKLPPAQ
PKEAENKRKLGSTEATIEERLGAMDLDRKGRKDDLQTNSFAVLLTQGLESNDFEILNKVLQTKNVNLIKR
TVLRIPLRVVIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRVKTF
QKLSNLHGKLILLVTQVTASEKSKKMTSPGQKAKLVYEEESSEEESDDEVPEKDSDDNWDEDEDKDSEKD
EGVDEDNEEEDEDMEDKEENEEDREVSSEKELNGDSDLDPENESEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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