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Report for CCDS49782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49782.1 Public Mus musculus 16 Ccdc74a 23 108 98 CCDS HistoryNCBI Gene:72315Re-query CCDS DB by CCDS ID:49782.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056962.10 ENSMUSP00000049541.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056962.10Link to Ensembl Protein Viewer:ENSMUSP00000049541.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056962Re-query CCDS DB by Protein ID:ENSMUSP00000049541
Original member NCBI NM_001166164.1 NP_001159636.1 Updated not alive Link to Nucleotide Sequence:NM_001166164.1Link to Protein Sequence:NP_001159636.1Re-query CCDS DB by Nucleotide ID:NM_001166164Re-query CCDS DB by Protein ID:NP_001159636
Current member NCBI NM_001166164.2 NP_001159636.1 Accepted alive Link to Nucleotide Sequence:NM_001166164.2Link to Protein Sequence:NP_001159636.1Re-query CCDS DB by Nucleotide ID:NM_001166164Re-query CCDS DB by Protein ID:NP_001159636Link to BLAST:NP_001159636.1

Chromosomal Locations for CCDS 49782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17646525 17646783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17647608 17647652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17648067 17648126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17648795 17648960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17649730 17649913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17649995 17650074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17650149 17650205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17650367 17650610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGAGCGGGGCCGGGCTGGCGGCCGGGGCTCGGCCCCTCAGCTCCGCGGCCCCAGGCTCCCGGGGCGCGG
CCCGCCTACGCCCGCGCCCTCCCGCCGGCCTGCAGCACGCGGGGACGCAGCCGCCTCCGCTCGGGTTCAG
CGAAGCACAGAAGCGGATCCTGGACCTGGAAAAGAGCCTGCAGTTCCTACAGCAGCAGCACTCGGAGACG
CTAGTCAAACTCCACGAGGAGATCGAGCACCTGAAGCGGGAGAATAAGGATCTCCACTACAAGCTAATCA
TGAATGAGAAGCCTCAGAAAAAAGGCAGCATCTCCACATGGAGCCTTCACTCTGGCAAGTCCGCCTCCAA
TTCCACGATGTCCGCCAACTCTCAAGGCAAGACCAGGCCCCAGCCCAGCTCCTTCAAGAAACAAGAGCTG
AAGTCTGAAGCCCTCCAAAAGACAGACCTGGAAGAGCAGTCACTCAGCAGTGCTGCCCTGTCCCACAGCA
GCAAGCTGGACAGAGTCCCTGGGGCTCAGGGACAGGCCAAAGACGAGGATGCAGAGCCCTCTAATTCAGG
GGCCACGTTGGTGGGGGGCAGCCATGGCCGGCAAGGGACGGGGATGGCCCCCTTAATGAGCCTGCCCCCG
CACCTGCGCAAGCCCACCACAGTGCAGCAGTGTGAGGTGGTCATCCGTCAGCTGTGGAACGCCAACCTCC
TGCAGGCCCAGGAGCTACGGCACCTCAAGTCACTCCTGGAAGGGAACCAAAGGCCCAAAGCTGCAGCTGA
GGAGGCTGGGCTGGGTTCTCCAAAGGACCAGGACACCATGCAGTTTCCCAAGGTCACCTCCAAGGGCCTT
AGTAAGAAGTGCTTAATTCTGAGCCCAATGCCTGCTGCAGAGCGAGGCATCCTGCCTGCATTGAAACAGA
GCCTGAAGAACAACTTTGCTGAGCGGCAGAAAAGGCTGCAAGTAGTACAGAGCCGCCGCCTGCACCGCTC
TGTGCTGCTGAGCCGGCGCCCTGGAGCCCGGCCATCCTCTCTCGATAGTGGCTCACACCAACCCTATTTT
GCAGCCACACGCAATTCCAAAACAGACAGAACCCACGACAGATAA

Translation (364 aa):
MSGAGLAAGARPLSSAAPGSRGAARLRPRPPAGLQHAGTQPPPLGFSEAQKRILDLEKSLQFLQQQHSET
LVKLHEEIEHLKRENKDLHYKLIMNEKPQKKGSISTWSLHSGKSASNSTMSANSQGKTRPQPSSFKKQEL
KSEALQKTDLEEQSLSSAALSHSSKLDRVPGAQGQAKDEDAEPSNSGATLVGGSHGRQGTGMAPLMSLPP
HLRKPTTVQQCEVVIRQLWNANLLQAQELRHLKSLLEGNQRPKAAAEEAGLGSPKDQDTMQFPKVTSKGL
SKKCLILSPMPAAERGILPALKQSLKNNFAERQKRLQVVQSRRLHRSVLLSRRPGARPSSLDSGSHQPYF
AATRNSKTDRTHDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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