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Report for CCDS29331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29331.1 Public Mus musculus 18 Rab27b 23 108 98 CCDS HistoryNCBI Gene:80718Re-query CCDS DB by CCDS ID:29331.1Re-query CCDS DB by GeneID:80718See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069749.8 ENSMUSP00000068349.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069749.8Link to Ensembl Protein Viewer:ENSMUSP00000068349.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069749Re-query CCDS DB by Protein ID:ENSMUSP00000068349
Original member Current member EBI ENSMUST00000117692.7 ENSMUSP00000112807.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117692.7Link to Ensembl Protein Viewer:ENSMUSP00000112807.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117692Re-query CCDS DB by Protein ID:ENSMUSP00000112807
Original member Current member EBI ENSMUST00000121693.7 ENSMUSP00000114094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121693.7Link to Ensembl Protein Viewer:ENSMUSP00000114094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121693Re-query CCDS DB by Protein ID:ENSMUSP00000114094
Original member Current member NCBI NM_001082553.2 NP_001076022.1 Accepted alive Link to Nucleotide Sequence:NM_001082553.2Link to Protein Sequence:NP_001076022.1Re-query CCDS DB by Nucleotide ID:NM_001082553Re-query CCDS DB by Protein ID:NP_001076022Link to BLAST:NP_001076022.1
Original member Current member NCBI NM_001302798.1 NP_001289727.1 Accepted alive Link to Nucleotide Sequence:NM_001302798.1Link to Protein Sequence:NP_001289727.1Re-query CCDS DB by Nucleotide ID:NM_001302798Re-query CCDS DB by Protein ID:NP_001289727Link to BLAST:NP_001289727.1
Original member Current member NCBI NM_030554.4 NP_085031.3 Accepted alive Link to Nucleotide Sequence:NM_030554.4Link to Protein Sequence:NP_085031.3Re-query CCDS DB by Nucleotide ID:NM_030554Re-query CCDS DB by Protein ID:NP_085031Link to BLAST:NP_085031.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076022.1 218 Q99P58 218 100% 0 0
NP_001289727.1 218 Q99P58 218 100% 0 0
NP_085031.3 218 Q99P58 218 100% 0 0

Chromosomal Locations for CCDS 29331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 69985188 69985377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69986912 69987035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69989544 69989647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69994477 69994562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69996069 69996221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGACTGATGGAGACTATGATTATCTGATTAAACTCCTGGCCCTTGGAGACTCAGGAGTCGGGAAGACAA
CATTTCTCTATAGATACACAGACAATAAATTCAATCCCAAATTCATCACCACAGTGGGAATAGATTTTCG
GGAAAAACGTGTGGTTTATGACACACAAGGAGCAGATGGAGCGTCAGGAAAAGCGTTTAAGGTACATCTG
CAGCTTTGGGACACTGCTGGACAAGAGCGGTTCCGGAGCCTTACCACTGCCTTCTTCAGAGATGCCATGG
GCTTCTTACTGATGTTTGACCTCACCAGTCAACAGAGCTTCTTGAATGTCAGAAACTGGATGAGTCAACT
GCAGGCAAATGCTTACTGTGAAAACCCAGACATAGTATTAATTGGCAACAAGGCAGACCTGCCAGACCAA
AGGGAAGTCAATGAACGGCAAGCACGGGAGCTGGCTGAAAAATATGGCATACCATACTTCGAAACAAGCG
CAGCTACAGGACAGAATGTAGAGAAGTCAGTGGAAACGCTTCTGGACTTAATCATGAAGAGAATGGAAAA
GTGTGTAGAGAAGACACAGGTTCCGGACACTGTCAATGGAGGAAATTCTGGAAAGCTGGATGGGGAAAAG
CCAGCAGAAAAGAAATGTGCCTGCTAG

Translation (218 aa):
MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL
QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ
REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGGNSGKLDGEK
PAEKKCAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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