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Report for CCDS52564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52564.1 Public Mus musculus 8 Sh2d4a 23 108 98 CCDS HistoryNCBI Gene:72281Re-query CCDS DB by CCDS ID:52564.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066594.3 ENSMUSP00000070825.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066594.3Link to Ensembl Protein Viewer:ENSMUSP00000070825.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066594Re-query CCDS DB by Protein ID:ENSMUSP00000070825
Original member Current member NCBI NM_028182.1 NP_082458.1 Accepted alive Link to Nucleotide Sequence:NM_028182.1Link to Protein Sequence:NP_082458.1Re-query CCDS DB by Nucleotide ID:NM_028182Re-query CCDS DB by Protein ID:NP_082458Link to BLAST:NP_082458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082458.1 421 Q9D7V1 421 100% 0 0

Chromosomal Locations for CCDS 52564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 68282231 68282411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68294303 68294459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68296654 68296825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68329252 68329360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68331035 68331236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68335065 68335195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68345953 68346173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68346654 68346746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGCTGAGGCAGATACTGTCAGATATGTTCATAGACCCTGACCTGCTGGCAGAGCTCAGCGAAGAGCAGA
AACAGATCTTGTTCTACAAGATGAGAGAGGAACAGATCCGACGATGGAAAGAAAGAGAAGCGGCCATGGA
AAGAAAGGAGTCCTTGCCAGTGAAATCCAGGCCAAAAAAAGAGAATGGCAAGTCTGTCCATTGGAAGCTG
GGCGCCGATAAGCAGGTGTGGGTTTGGGTAATGGGCGAGCACCATCTGGACAAACCCTATGATGTGCTGT
GTGATGAGATCCTTGCGGAGAGGGAGCATCTGAGAGCAGCGAAGGATTCAGAGCTCAGGAAAACTCAGTC
TCTAGAACTCGCCAATAGCTTAAAAATAAAGTCACAGAACTGTGATCTGCAAGCAATGAAGAAGACAGAG
CCTCAGAATGTCACCAGGAAAGCAGCTTCAGAAGAGGCATCAGGTCAAGGACCCAGAGCAATACCAACCA
GGAAGGATGACAAAGCCCAAACTAAACCCGTCAAGGAAAAAGACCACGAGGAAATGAAGCAGACAGAGGA
TGAGAAAACCAAGCAGATATACAAGAGCTGGAAAGAAGACTCAGAATGGCAAGCATCTCTGCGAAAATCT
AAGGCGGCTGATGAGAAGAGACGCTCTTTAGCTAAACAAGCACGGGAAGACTACAAGAGGCTATCCCAAA
GGGGGAGGAGTGGGGACGGACTGCAGAACCCACTGACAGGTCCACAGAAGCCCAGAAGACCTCCTCTTCC
TCCGAAGCCCCAGTTCCTACAGCCGCTGGGAATCCCTCCAAAGTCTTTAGGGAATCAGGGGGTGATAAGG
ACCGAGATCAGCTCCGCCCAGATGGACACCATTCGATGGTTCAAAGAGGAACAGTTGCCATTCCGTGCAG
GTTACCAGAAAAACTCAGACACCATTGCTCCTTGGTTCCATGGGATTCTCACACTGAAGAAAGCAAATGA
ACTTCTGAGCACAGGTGTGCCGGGAAGTTTTTTGATTCGAGTCAGTGAAAAGATCAAGGGCTATGCCCTG
TCCTACCTGTCTGAGGAAGGCTGCAAACATTTCCTTATAGATGCATCTGCCAACTCTTACAGCTTCCTGG
GTGTGGACCAGCTGCAGCATGCTACACTGGCAGATTTGGTGGAATATCACAAGGAGGAGCCCATAACCTC
TCTGGGGAAGGAACTCCTTCTGTACCCCTGTGGTCAACAAGACAAGCTGCCCGACTACCTGGAGCTCTTC
CAGTGA

Translation (421 aa):
MLRQILSDMFIDPDLLAELSEEQKQILFYKMREEQIRRWKEREAAMERKESLPVKSRPKKENGKSVHWKL
GADKQVWVWVMGEHHLDKPYDVLCDEILAEREHLRAAKDSELRKTQSLELANSLKIKSQNCDLQAMKKTE
PQNVTRKAASEEASGQGPRAIPTRKDDKAQTKPVKEKDHEEMKQTEDEKTKQIYKSWKEDSEWQASLRKS
KAADEKRRSLAKQAREDYKRLSQRGRSGDGLQNPLTGPQKPRRPPLPPKPQFLQPLGIPPKSLGNQGVIR
TEISSAQMDTIRWFKEEQLPFRAGYQKNSDTIAPWFHGILTLKKANELLSTGVPGSFLIRVSEKIKGYAL
SYLSEEGCKHFLIDASANSYSFLGVDQLQHATLADLVEYHKEEPITSLGKELLLYPCGQQDKLPDYLELF
Q


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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