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Report for CCDS16705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16705.1 Public Mus musculus 2 Zfp661 23 108 98 CCDS HistoryNCBI Gene:72180Re-query CCDS DB by CCDS ID:16705.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077422.11 ENSMUSP00000076637.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077422.11Link to Ensembl Protein Viewer:ENSMUSP00000076637.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077422Re-query CCDS DB by Protein ID:ENSMUSP00000076637
Original member Current member EBI ENSMUST00000110366.7 ENSMUSP00000105995.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110366.7Link to Ensembl Protein Viewer:ENSMUSP00000105995.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110366Re-query CCDS DB by Protein ID:ENSMUSP00000105995
Original member Current member EBI ENSMUST00000110368.8 ENSMUSP00000105997.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110368.8Link to Ensembl Protein Viewer:ENSMUSP00000105997.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110368Re-query CCDS DB by Protein ID:ENSMUSP00000105997
Original member Current member EBI ENSMUST00000164551.1 ENSMUSP00000132820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164551.1Link to Ensembl Protein Viewer:ENSMUSP00000132820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164551Re-query CCDS DB by Protein ID:ENSMUSP00000132820
Original member Current member NCBI NM_001111029.1 NP_001104499.1 Accepted alive Link to Nucleotide Sequence:NM_001111029.1Link to Protein Sequence:NP_001104499.1Re-query CCDS DB by Nucleotide ID:NM_001111029Re-query CCDS DB by Protein ID:NP_001104499Link to BLAST:NP_001104499.1
Original member Current member NCBI NM_001355622.1 NP_001342551.1 Accepted alive Link to Nucleotide Sequence:NM_001355622.1Link to Protein Sequence:NP_001342551.1Re-query CCDS DB by Nucleotide ID:NM_001355622Re-query CCDS DB by Protein ID:NP_001342551Link to BLAST:NP_001342551.1
Original member Current member NCBI NM_028141.3 NP_082417.3 Accepted alive Link to Nucleotide Sequence:NM_028141.3Link to Protein Sequence:NP_082417.3Re-query CCDS DB by Nucleotide ID:NM_028141Re-query CCDS DB by Protein ID:NP_082417Link to BLAST:NP_082417.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104499.1 427 Q8BIQ3 427 100% 0 0
NP_001342551.1 427 Q8BIQ3 427 100% 0 0
NP_082417.3 427 Q8BIQ3 427 100% 0 0

Chromosomal Locations for CCDS 16705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127576935 127577944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127578604 127578717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127580897 127581023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127581476 127581508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGCTGCCGTGTCTCCGCCTACCAGATGTCAGGCATTGGTGACATTTGAAGATGTGGCGGTGACTTTCA
CAGATGACGAGTGGAAGCGTCTGGTACCCGTGCAGAGGGCTCTCTACAAGGCCGTGATGCTAGAGAACTA
TGAGAGCATCATCTCTCTGGGTCTTCCTGTTCCTCGACCTGATGTGATTCTTCAGTTCAAGAGAAGGGGC
GAGCCCTGGATTCGGGGTTTTCATGGATCTGAGGAGAAAACATGGCCAGAGAGTGTCTCTCTAGACTTGG
AAACTAAGCCTGAGACCCTAGATGCTTCAAGAGGCACACTGAGAGAAATCCATAGAAAGCAAAGTTCTCT
ATGCCCTAAACGAGAAATCCAAACACTAACAGGTGGGCCGGAACCAGAGAAGGAAAGTCCCAAAGCAAGG
ACTTGCAAAAAGCCCCTTTCCTTGGATAAAGGCTTGCATCAAATGTCAGCTCCATCCAAGAAAGCCCTCA
CTAAACACCAAGACCAGGAATGTAGTGAGTGTGGGAAGACCTTCTTTGACCATTCGTCCCTCATCCGACA
CCAGAGGACTCACACTGGAGAGAAGCCATATGACTGTCCCGAGTGTGGGAAGGCCTTCAGCCACAGGAGC
AGTCTCAGTAGACATCTGATGTTCCACACCGGAGAGAGTCCGTACGAGTGTGATGCATGTGGCAAGGCCT
TCTTTGACCGTTCATCCCTAACTGTGCATCAGCGGATTCACACAGGGGAGAAGCCGTTTAAATGCAATGA
CTGTGGCAAAGCCTTCTTCGACCGCTCATCCCTCACTCGCCACCAGAGAATCCATACCGGAGAGAGTCCC
TACGAATGCCAGCAGTGTGGGAAAGCCTTCAGCCAGAAAAGCATTCTCACTCGGCACCTGCTGACCCACA
CTGGCAGGAAGCCTTACGAATGCAGGGACTGTGGGAAAGCATTCTATGGCGTCACCTCCCTAAACAGACA
CCAAAAAGTGCACACTGAGGAGCCCCGCTATCAGTGCAGCGAGTGTGGCAAAGCTTTCTTTGACCGCTCT
TCTCTTACGCAGCACCAGAAGATACACACTGGAGACAAGCCATATGAGTGCGGCGAGTGTGGAAAGGCCT
TCAGCCAGAGGTGCCGGCTCACGAGACATCAGAGAGTTCATACGGGGGAGAAACCCTTTGAGTGCAGTGT
GTGCGGCAAAGAGTTCAGCTCTAAGTCCTCCATTATTCAGCATCAGAGACGTTACGCCAAACAAGGGATA
GACAGAGGGGGAAGCATGAGCTAG

Translation (427 aa):
MAAVSPPTRCQALVTFEDVAVTFTDDEWKRLVPVQRALYKAVMLENYESIISLGLPVPRPDVILQFKRRG
EPWIRGFHGSEEKTWPESVSLDLETKPETLDASRGTLREIHRKQSSLCPKREIQTLTGGPEPEKESPKAR
TCKKPLSLDKGLHQMSAPSKKALTKHQDQECSECGKTFFDHSSLIRHQRTHTGEKPYDCPECGKAFSHRS
SLSRHLMFHTGESPYECDACGKAFFDRSSLTVHQRIHTGEKPFKCNDCGKAFFDRSSLTRHQRIHTGESP
YECQQCGKAFSQKSILTRHLLTHTGRKPYECRDCGKAFYGVTSLNRHQKVHTEEPRYQCSECGKAFFDRS
SLTQHQKIHTGDKPYECGECGKAFSQRCRLTRHQRVHTGEKPFECSVCGKEFSSKSSIIQHQRRYAKQGI
DRGGSMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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