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Report for CCDS39241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39241.1 Public Mus musculus 5 Ddx54 23 108 98 CCDS HistoryNCBI Gene:71990Re-query CCDS DB by CCDS ID:39241.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031598.10 ENSMUSP00000031598.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031598.10Link to Ensembl Protein Viewer:ENSMUSP00000031598.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031598Re-query CCDS DB by Protein ID:ENSMUSP00000031598
Original member NCBI NM_028041.2 NP_082317.1 Updated not alive Link to Nucleotide Sequence:NM_028041.2Link to Protein Sequence:NP_082317.1Re-query CCDS DB by Nucleotide ID:NM_028041Re-query CCDS DB by Protein ID:NP_082317
Current member NCBI NM_028041.3 NP_082317.1 Accepted alive Link to Nucleotide Sequence:NM_028041.3Link to Protein Sequence:NP_082317.1Re-query CCDS DB by Nucleotide ID:NM_028041Re-query CCDS DB by Protein ID:NP_082317Link to BLAST:NP_082317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082317.1 874 Q8K4L0 874 100% 0 0

Chromosomal Locations for CCDS 39241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120613136 120613306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120616959 120617088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120618140 120618210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120618600 120618788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120618876 120618925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120619605 120619646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120619764 120619859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120620258 120620379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120620472 120620533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120620627 120620758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120621615 120621825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120623181 120623315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120623572 120623808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120623892 120623965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120624538 120624729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120625702 120625844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120625926 120626039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120626401 120626505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120626834 120626949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120627060 120627292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGGCTGCTGGCAGACGTGTGGGACCTGGCCCGCCGTCGCGTCCCACCATGGCGCCGTGGAAGAAGAAGA
GGCTGCGGAAACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGAGAT
CCAGGCGGAGGATGACGCCCGGGCGAGGAAGCTGGGCCCTGGCAGAGCCTTGCCCTCATTTCCTACCTCA
GAGTGCGTATCAGATGTGGAGCCCGACACTCGGGAGATGGTGCGAGCCCAGAACAAGAAAAAGAAGAAGT
CTGGAGGCTTCCAGTCCATGGGCCTGAGTTACCCTGTGTTCAAGGGGATCATGAAAAAGGGCTACAAGGT
GCCGACGCCCATCCAGAGGAAGACCATCCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCATGGCCCGG
ACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTGAGCGGCTGAAGGCACGCAGTGCACAGA
CGGGGGCTCGAGCCCTCATCCTCTCACCCACCCGGGAGCTGGCCCTGCAGACCATGAAGTTCACTAAAGA
GCTAGGCAAGTTCACCGGCCTCAAGACTGCCTTGATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGCA
GCCCTGCACGAGAACCCTGACATAATCATTGCCACCCCTGGGCGTCTGGTGCATGTGGCTGTGGAGATGA
ACTTGAAGCTGCAGAGTGTGGAGTATGTGGTGTTCGATGAAGCAGACAGGCTCTTTGAAATGGGCTTTGC
TGAGCAGCTACAGGAGATCATAGGCCGCCTTCCTGGGGGCCACCAGACGGTGCTGTTCTCAGCTACACTG
CCCAAGCTGCTGGTGGAATTTGCACGGGCAGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACT
CCAAGCTCAATGAGCAGCTCAAGACCTCCTTCCTCCTTGTGCGCGAAGACACCAAGGCTGCTGTGCTCCT
CTACCTGCTGCAGAATGTCGTTCGGCCCCAGGACCAGACTGTGGTGTTTGTAGCCACAAAGCACCATGCG
GAGTACCTCACAGAGTTGCTGATGGGCCAGGGTGTGAGTTGCGCCCACATCTATAGTGCCTTGGACCAGA
CGGCCCGCAAGATCAACTTGGCCAAGTTCACACACAACAAATGTTCCACCCTCATCGTGACTGACCTGGC
CGCCCGGGGCCTGGACATCCCACTGCTGGACAACGTCATCAACTACAGCTTCCCTGCCAAGGGCAAGCTC
TTCCTGCACCGAGTGGGCCGTGTGGCCCGAGCAGGCCGAAGTGGCACAGCCTATTCTTTGGTGGCCCCAG
ACGAGGTCCCCTACCTGCTTGACCTACACCTGTTCCTGGGCCGCTCTGTCACCCTGGCCCGTCCTTGTGA
GGAGCCTTCAGTGGCAGATGCGGTTGGCAGGGACGGAGTGCTGGGTCGCGTGCCCCAGAGTGTAGTGGAT
GATGAGGACAGCAGCCTGCAGACTGCCATGGGGGCATCCCTGGATCTTCAGGGCCTGCACCGCGTGGCCA
ACAACGCTCAGCAGCAGTATGTGCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGA
GCTGGACCTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTCATGCTTTGAGGAGGGAGAGCTCCAACGC
CTGAGGCTGGTGGACAGCATCAAGAACTATCGCACGCGCACAACCATCTTTGAGATCAATGCCTCCAGCA
AGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAGTTTCCAGCA
GCGGCGCCAGGAAAGGCAGGAAGGCCCAGCTGACCCAGCCCCCCAGAGGGAGCTGCCTCAGGAGGAGGAG
GAGGAGATGGTTGAGACTGTAGAGGGTGTCTTCACAGAAGTCGTGGGCCAGAAACGGCCAAGGCCGGGAC
CCAGCCAAGGAGCCAAGAGGCGGAGGATGGAGACCCGTCAGCGAGACCAGGAGTTTTATGTCCCCTACCG
GCCCAAGGATTTCGACAGTGAGCGGGGGCTGAGTGTCAGTGGGGCTGGAGGGGCCTTTGAGCAGCAGGTG
GCTGGTGCAGTCCTGGACCTGATGGGGGATGAAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGT
GGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAG
CGGCCGGTTTATCAGCAGCTCTTACAAGCGGGATCTCTACCAGAAGTGGAAGCAGAAGCAGAAAATTGAT
GACCGGGACTCCGAGGAAGAAGGGCCATCCAACCAGCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAG
GTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCCGCATGCGCTCGGAACTCAA
GACCAAGGAGCAAATCCTCAAGCAGCGCCGGCAAGCTCAGAAGCAGCGCTTCCTGCAGCGAGGGGGCCTG
AAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGGGTGCTC
CCTCCAGGAAGGGCAAGATGAGGAAAAGGATGTGA

Translation (874 aa):
MAAGRRVGPGPPSRPTMAPWKKKRLRKRRTGASQGRDSDSDDGEFEIQAEDDARARKLGPGRALPSFPTS
ECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR
TGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFA
ALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATL
PKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHA
EYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKL
FLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGRDGVLGRVPQSVVD
DEDSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQR
LRLVDSIKNYRTRTTIFEINASSKDPSSQMMRAKRQRDRKAVASFQQRRQERQEGPADPAPQRELPQEEE
EEMVETVEGVFTEVVGQKRPRPGPSQGAKRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQV
AGAVLDLMGDEAQNMSRGQQQLKWDRKKKRFVGQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQKQKID
DRDSEEEGPSNQRGPGPRRGGKRGRSQGTSQPRASSVPAGRMRSELKTKEQILKQRRQAQKQRFLQRGGL
KQLSARNRRRAQELRQGAFGRGAPSRKGKMRKRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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