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Report for CCDS51064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51064.1 Public Mus musculus 3 1700006A11Rik 23 108 98 CCDS HistoryNCBI Gene:71824Re-query CCDS DB by CCDS ID:51064.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029598.9 ENSMUSP00000029598.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029598.9Link to Ensembl Protein Viewer:ENSMUSP00000029598.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029598Re-query CCDS DB by Protein ID:ENSMUSP00000029598
Original member Current member NCBI NM_027939.2 NP_082215.1 Accepted alive Link to Nucleotide Sequence:NM_027939.2Link to Protein Sequence:NP_082215.1Re-query CCDS DB by Nucleotide ID:NM_027939Re-query CCDS DB by Protein ID:NP_082215Link to BLAST:NP_082215.1

Chromosomal Locations for CCDS 51064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 124401390 124401413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124406331 124406520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124407592 124407701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124409616 124409774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124412386 124412561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124413565 124413823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124414312 124414501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124416735 124416844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124419224 124419385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124419756 124419934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124421377 124421452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGATAATGAGCAACCATCAAGGAACTTCTGGACCACATGAGTCAGAAAACTTCGTGGATGTTCTCAACC
TGCCAGATGCAGAGAAGAAAACAGTTAACAAAAAACAGCCTTTCATAACTCAAGTATTCCACAAGGCCTC
GGTGCCCCACCAGGACCAAGTTTGCACATCCCTGCCAGTTACTAAGAGAGGAATACTTTTTGGAAATGAT
CTCTCTGTTGTTTGTGATGATGGAAATCTTCCTAAAGCAATTCTGGATATGCTCTCCATTCTCAACGAAA
AAGGAGCAATCACTGAAGGCATCTTCAGGATATCAGGCAATATGTCAGCATGCCACGCCCTAAAAGAAAG
GCTGGATTATGGAAAAAAGGTGAATCTGAAAAAGGAATGTGTTCTCGCTGTGGCATCTGTCTTAAAGGAG
TTTCTTCATAATATACAAGGAAGTGTGCTGACTTCTAGACTGTATGATATATGGCTTGATGTCCTTGACC
AAGAAAATGAAGAGGAGAAACTAGCTGCAGTGCAGAGTCTTTTACAGCGTCTGCCTTACCCAAATGTCAG
CCTCTTGAGAGAACTTTTCAGAATGCTACACAACATAGAAAGAAATTCTGCAGTTAACAAAATGACTGCT
TATAGTTTATCTGTTTGCATGGCCCCATGTATCCTATGTCTGCCTCGTTCCTGCAACTCGGGATTAGCAA
ATGATATCTCCAATGAGATTTCCCTTGTAAAATTTCTCATCGAAAACAGTCTGAAAATATTTGGAGAAAG
CACGGTTTTACGTTATGATGCAAGCTCAGTGTCTTGCCCTGATGTGGAGAAAGCATCAGGTCCCCTAAAC
AATATAACTAACTTTGATGAGATGAAGGATAAGGAATATCAAGACAACCACTGTCAAAGTGGGATGACAT
GCCCTACAGGCAACAATTCAGTGCCCATGAGTCCAACTGCTCCTCTTCACAATGAGGGGACTATAGCTTC
TGAGAAACCTGTCAAAAGATCTTTTATAAAGCCAATGATTACCTGTGGCTCAACTACCAGCCATGACAAT
GTGTGTATAACCCCATCCCCATCAGCACCAAACAAGGGACACCTCTTTGGAAAGTCTCTCACCATTATCT
GTAAGGATGGTAATCTGCCTGCTCCAGTTTTGGACATGCTTTCTATCATCGATGCAAAAGGACCAGACAC
AGAGAGAATATTCAGAACATTAGCTAATAAACCATACCTCACCTTAAGAGAAAAGCTTGACTCTGCAGAG
GAAATGAACTTGAGAGAGGAATCTGTTTATATCGTAGCATCTGTCTTAAAGGAATTTATTAGGAATATTC
CAGGAAGCTTACTTTGCTCTAATCTGTATGGAAAATGGCTTGCTGTCCTTGATCAAGAATTCCATGATCA
AAAGATTTCTGCTATCCAAAGTCTTTTAATACAGATGCCATTACCAAATGTTCTCCTTTTGAGACACCTT
CTCTCTGTGCTACACAAGATTAAAGGTCGCTCTTCTATTACTCACATGACTGCTTACGCTTTATCAGTTC
GCATAGCTCCAAGTATGCTTTGGAATCCTTCTCTCTCCAACTCAGGGTTTGGGAATGATATCTCACAAAA
GAAACGACTGCAGAAGGAGACTTGA

Translation (544 aa):
MIMSNHQGTSGPHESENFVDVLNLPDAEKKTVNKKQPFITQVFHKASVPHQDQVCTSLPVTKRGILFGND
LSVVCDDGNLPKAILDMLSILNEKGAITEGIFRISGNMSACHALKERLDYGKKVNLKKECVLAVASVLKE
FLHNIQGSVLTSRLYDIWLDVLDQENEEEKLAAVQSLLQRLPYPNVSLLRELFRMLHNIERNSAVNKMTA
YSLSVCMAPCILCLPRSCNSGLANDISNEISLVKFLIENSLKIFGESTVLRYDASSVSCPDVEKASGPLN
NITNFDEMKDKEYQDNHCQSGMTCPTGNNSVPMSPTAPLHNEGTIASEKPVKRSFIKPMITCGSTTSHDN
VCITPSPSAPNKGHLFGKSLTIICKDGNLPAPVLDMLSIIDAKGPDTERIFRTLANKPYLTLREKLDSAE
EMNLREESVYIVASVLKEFIRNIPGSLLCSNLYGKWLAVLDQEFHDQKISAIQSLLIQMPLPNVLLLRHL
LSVLHKIKGRSSITHMTAYALSVRIAPSMLWNPSLSNSGFGNDISQKKRLQKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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