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Report for CCDS19858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19858.1 Public Mus musculus 5 Ptcd1 23 108 98 CCDS HistoryNCBI Gene:71799Re-query CCDS DB by CCDS ID:19858.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031628.9 ENSMUSP00000031628.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031628.9Link to Ensembl Protein Viewer:ENSMUSP00000031628.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031628Re-query CCDS DB by Protein ID:ENSMUSP00000031628
Original member Current member NCBI NM_133735.2 NP_598496.3 Accepted alive Link to Nucleotide Sequence:NM_133735.2Link to Protein Sequence:NP_598496.3Re-query CCDS DB by Nucleotide ID:NM_133735Re-query CCDS DB by Protein ID:NP_598496Link to BLAST:NP_598496.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598496.3 695 Q8C2E4 695 100% 0 0

Chromosomal Locations for CCDS 19858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145148332 145148505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145151286 145151468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145152118 145152234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145154674 145155378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145158740 145158841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145159475 145159693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145161039 145161179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145165061 145165507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGACCTCCTAAGACTCTCCCGGCTCTTTTCCGGTCCCCGCCCCATAGGACTGTCTGTCCTTCAACACC
TGGATCTTGTTGGATCAACCCGATGGACAGGAGGCAGGGAGGGACCTGCACGGCTGAGAGCTGCCTTCTG
CGGCTCCTCCTCCCCGCTGCCCCTGGGCAGCGGGAACCAGAAGGAAATGAGCAGCCTCTGCTCTGACTCC
AGTAAGCTCAGCACTGTGGCTCCCCAGGAGGAGGCAGAGGAAGAGAGCTTCGGGAGCCTCTCTGGCAAAT
TCTCCTCCCGGAGGATATTCCACAAGTCAACGGCCCAGCTCTACAACCTGCAGCTCAAGGAACAGGGTGG
TGAGGAGGAAGAACTGGAGCCCAGACCGTGGCGGGGCCGGAGGAACACTCAGTACTGGTACTTCTTTCAG
TGCAAACGTCTGATCAAGGAAGGAAAGCTTGCAGAGGCCCTGGATCTGTTTGAGAGGCAGATGCTGAAGG
AAGAGCGCTTGCAGCCTCTGGAGTGCAACTACACGGTGCTGATTGGGGGCTGCGGGCGCGTCGGGTACCT
GAAGAAGGCTTTCAGACTCTTCAATGATATGAAGAAGAGAGACCTGGAGCCCTCGGATGCCACATACACA
GCTCTGTTCAATGTCTGTGCGGAGTCCCCCTGGAAGGACTCTGCCCTGCAGAGTGCCCTGAAGCTCCGAC
AGCAGCTCCAGGCCAGAAACTTCCAGCTCAACCTGAAAACGTATCATGCCCTGCTGAAGGTGGCCGCCAA
GTGTGCAGACCTCAGGCTGTGCCTGGATGTCTTCAAGGAAATCATCCAAAGGGGGCATGCAGTCACAGAG
GAGACCTTCTGTTTTCTGCTTGTGGGCTGCATCCAGGACAAGAAGACAGGCTTCCGGCAAGCCATGCAGG
TGTGGCGGCAGATGCTGAGTCTGGGGATCAAACCAAGTAGGCATGGCTACAACCTCCTGTTGGAGGCAGC
TCGAGACTGTGGTCTGGGGGACCCAGAGGTTGCCTCCAGGCTGCTCCTGACGTCCCAGGAAGAGACCATC
TTGCTCCCACCCCCAAAGGGCAGGCATATGGCAGGGAGGAAAGTCCAGGCCAAGACAGTGCATGGTGTGT
CACTCAGACATGTGGAAGCACTGGAGAGGCAGCTGTTTCTGGAACCTTCTCAGAAACTCGAGGGGCCACC
AGCCCTTCCTGAGGCCAGGGTAACAAGCAGGACCCAGCCTGAGGTGGAAACCACGGCAGAACCTGGCCAC
ACAGTAGCCCTCACCCCACTGGCCTCGAAACCTACCCACTTGGAGCTGGAAGTCAGTCTCCTAAGTCTTG
GAACTCTCTCCCCCGCTGTGGTCTCATTTGGGACAGTGGCCACACCTGCTGATAGGCTGGCGTTGATGGG
GGGCCTGGAAGGCTTCCTGGGCAAGATGACCGAACACGGGCTCCAGCCAGACATCAAAACCCTCACTCTG
CTGGCTGAGGTGGTGGAGCCTGGGAGCACTGCAGAATCCTCGCTGCTTTCCGTCCTGGACAGGCATAGGG
TGGAGGCCGACGTAACCTTCTTCAACACGCTGATAAGGAAAAAGAGCAAACTGGGAGACCTGGAGGGAGC
CAAGGCACTGTTGCCAATCCTGGCAAAGAAGGGAATTGTCCCCAATCTTCGGACTTTCTGCAATCTGGCC
ATTGGTTGCCATCGGCCCAGGGATGGTATGCAGCTGCTTGCAGACATGAAGAAGTCCCAGGTGAGCCCTA
ACATCCACATCTACAGCACCCTTATCAACGCAGCCCTCAAGAAGTTGGACTACACCTATCTCATCAGCAT
CCTGAAGGACATGAGGCAGAACAGCGTCCCAGTAAACGAGGTGGTCGTCCGCCAGCTGGAGTTTGCAGCC
GAGTACCCTCCCACCTTTGACCGGTACAAAGGAAAAAACACCTACTTGGAGAAGATTGATGGCTTTCGGG
CTTATTACAAGCAGTGGTTGAAAGCCATGCCAGCAGAGGAAGCCCCCCACCCCTGGCAGGAGTTCCAGAA
CAAGCCTGTTGGGGACCAAGACACCACTGACAAGGCTGGCGGCCTTAGGGACGGATGA

Translation (695 aa):
MDLLRLSRLFSGPRPIGLSVLQHLDLVGSTRWTGGREGPARLRAAFCGSSSPLPLGSGNQKEMSSLCSDS
SKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLYNLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQ
CKRLIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYT
ALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTE
ETFCFLLVGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEETI
LLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGH
TVALTPLASKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHGLQPDIKTLTL
LAEVVEPGSTAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLA
IGCHRPRDGMQLLADMKKSQVSPNIHIYSTLINAALKKLDYTYLISILKDMRQNSVPVNEVVVRQLEFAA
EYPPTFDRYKGKNTYLEKIDGFRAYYKQWLKAMPAEEAPHPWQEFQNKPVGDQDTTDKAGGLRDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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