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Report for CCDS51847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51847.1 Public Mus musculus 6 Chst13 23 108 98 CCDS HistoryNCBI Gene:71797Re-query CCDS DB by CCDS ID:51847.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070890.5 ENSMUSP00000064897.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070890.5Link to Ensembl Protein Viewer:ENSMUSP00000064897.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070890Re-query CCDS DB by Protein ID:ENSMUSP00000064897
Original member Current member NCBI NM_027928.1 NP_082204.1 Accepted alive Link to Nucleotide Sequence:NM_027928.1Link to Protein Sequence:NP_082204.1Re-query CCDS DB by Nucleotide ID:NM_027928Re-query CCDS DB by Protein ID:NP_082204Link to BLAST:NP_082204.1

Chromosomal Locations for CCDS 51847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90308968 90309807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90318259 90318341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90325075 90325162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGGAAGACGCTCCTGTTGCAGGCGGCCCTTGCCGGTGGTGGCAAGTCTGGGTGCTGCACTCCTGCTCC
TGTGCGCCCTGCGTCCCGCATTTGAAAATAAAGCTCTGGGCTCCAGCTGGTTCGGTGGAGTGAGGAAGAG
TCCCCTACAGCTGTTGCGTGACCTGGACCAGGGTCCACGCTCCGCGATGGCCGAGGTGCACCAGCAGCGG
CGTGAGCTGCTGCGCCGGGCCTGCAGCCGCCACACGCGACGCCAACGCCTGCTGCAGCCGGAGGACCTGC
GTCACGTGCTGGTGGACGACGCGCACCGGCTGCTGTACTGCTACGTGCCTAAGGTGGCCTGCACCAACTG
GAAGCGTGTGATGCTGGCGTTGCGCGGCCGTGGGGATCCAAGCGCAATCCCTGCGCACGAGGCGCATGCG
CCTGGCCTGCTGCCCTCGCTGGCCGACTTTGCGCCGGCTGAGGTCAACTGGCGGCTGCGCGACTACCTGA
CCTTTCTCTTCGTGCGGGAGCCCTTCGAGCGCCTGGCGTCAGCCTACCGCAACAAGCTGGCGCGGCCACA
CAGCGCGGCCTTCCAGCGGCGCTATGGCACACGCATCGTGCGTCGCCTACGACCACACGCGCAGCCCGAT
GCGCTGGCCCGCGGCCACGACGTGCGCTTCGCCGAGTTCCTGGCCTACCTGCTCGACCCGCGCACGCGCC
GTCATGAGCCCTTCAACGAACACTGGGAGCGCGCACACGCGCTGTGCCATCCGTGCCTAGTGCGCTATGA
TGTAGTGGGCAAGTTTGAGACGATAGCAGATGATGCTGCCTTCGTGCTGGACCTGGTGGGTGAGCCTGGG
CTACGTTTCCCTGCTCCACCGCTGAGGCCAGAGAAGGACCTTACGCGTGAGCAGGCCCGGCGCCTTTTCC
AGGACATCAGCCCCTTCTACCAGCGTCGCCTCTTTAACCTCTATAAGATGGACTTTCTGCTCTTCAATTA
CTCTGCCCCTTCCTACCTGCGACTGCAATAA

Translation (336 aa):
MGRRSCCRRPLPVVASLGAALLLLCALRPAFENKALGSSWFGGVRKSPLQLLRDLDQGPRSAMAEVHQQR
RELLRRACSRHTRRQRLLQPEDLRHVLVDDAHRLLYCYVPKVACTNWKRVMLALRGRGDPSAIPAHEAHA
PGLLPSLADFAPAEVNWRLRDYLTFLFVREPFERLASAYRNKLARPHSAAFQRRYGTRIVRRLRPHAQPD
ALARGHDVRFAEFLAYLLDPRTRRHEPFNEHWERAHALCHPCLVRYDVVGKFETIADDAAFVLDLVGEPG
LRFPAPPLRPEKDLTREQARRLFQDISPFYQRRLFNLYKMDFLLFNYSAPSYLRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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