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Report for CCDS51666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51666.1 Public Mus musculus 5 Lrwd1 23 108 98 CCDS HistoryNCBI Gene:71735Re-query CCDS DB by CCDS ID:51666.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006301.10 ENSMUSP00000006301.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006301.10Link to Ensembl Protein Viewer:ENSMUSP00000006301.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006301Re-query CCDS DB by Protein ID:ENSMUSP00000006301
Original member Current member NCBI NM_027891.4 NP_082167.2 Accepted alive Link to Nucleotide Sequence:NM_027891.4Link to Protein Sequence:NP_082167.2Re-query CCDS DB by Nucleotide ID:NM_027891Re-query CCDS DB by Protein ID:NP_082167Link to BLAST:NP_082167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082167.2 648 Q8BUI3 648 100% 0 0

Chromosomal Locations for CCDS 51666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136123175 136123315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136123403 136123512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136123600 136123755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136123867 136123958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136130221 136130361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136130463 136130535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136130974 136131181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136131453 136131562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136132112 136132226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136132306 136132428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136132975 136133079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136133305 136133445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136133934 136134050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136134499 136134733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136135872 136135951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGCTCCTCTCACGCCGCAACTGCTCCTGCAACGTGGGCGACCCAAGACGGATAAGCTGGGGAAGATTC
AGAGTTTGAATCTGTCGGGGCTGCAGCTGCTCTCAGAGCACTTGGATCCCAATCTCCTGGGGCGCCTGAA
GAAGCTGAGGGAACTTGACCTCTCTAACAACTTGCTGGAGACGCTGCCTGCTAACCTGGGCCTGTCCCAT
CTGCGCATCCTTCGCTGTACCAACAACCAGCTCGGGGATGTCACTGCCTTGCACCAGTTCCCAGAACTTG
AGGAGCTCAATCTGGAAGGCAACCCCTTCCTGACGGTCAGTGACAACCTCAAAGTCTCCTTTCTCCTGCC
CAAGCTTCGTAAGGTGAATGGCAAGGACACGGCCTCCACCTGCTCACAGGTGGAGAATCTAGATCGGGAG
CTGATGGACAGGGTCACAGCTCACTGGCAGAAGTTCATAGCCACTGTGAGCCCTGAGGAGGAAACTGACA
AGGTGCGGGCTGATTTCATGAGGTCTGCAGTCAGGGATGTGTGTTACGGCCCTGAGTCGCTCATCGAGTT
CACGCAGTGGCGGGTGCGGATGATCGCCGAGGAACTGGTGGCCTCAGGTGGGGCCCAGGTGCAAGACGCT
AAGGTCCCCGTGGAGCATCCCCAGGCTGCAGGTGCCTCCAAGTTCAGGGCCAGAGAGGTGGCTTCAAAAC
GGCCAGGTAAAGACCCAGTCACCCTTCCTCCCAGCAAGCGAGTGCGTGCTCTCCCACCTGCTCAGGCTGA
GGGCAGTCCTATGGGTGCTGATGGAGGGCAGGCTGCCCTACACCTGGAACCCCTGCACTTCCTGCAGTGT
CATAGCAGAAACAACAGCCCAAAGGACCTGGAGACCCAGCTGTGGGCCTGTGCCTTTGAGCCGGCCCGGG
AGGAGGGGCACTCGAGGGCCACATCCCAGACCGTGGCCACATGTGGTGGAGAGGCTGTTTGCGTGATAGA
CTGCCAGACAGGCCTCGTACTCCATAAGTACAAGGTACCAGGCGAGGAGTTCTTCTCAGTGGCCTGGACA
GCCCTCACGGTGGTCACCCAGGCAGGCCACAAGAAGCGCTGGAACATGCTAGCAGCTGCAGGCCTCCGCG
GCATGGTCCGGCTGCTGCATGTTCGCGCAGGCTTCTGCTGCAGCGTCATCCGGGCCCATAAGAAGGCCAT
TGCCACCCTCTGCTTCAGCCCCAGCCATGAGACTCACCTCTTCACTGCCTCCTACGACAAACGGATCATC
CTCTGGGACATTGGGGTGCCCAACCAGGATTACAAGTTCCAGGCTAGCCAGCTCCTCACGCTCAACTGTG
GTTCTGTCCCCTTGCGCCTCTGTCCTGTTGCCACCTGCCCAGATGACTTCCTGCTGGCTGGCTGTGAGGG
TGGCTGCTACTGCTGGGACGTGCGGCTAGACCAGCCCCAGAAGCAAAGGGTGTGTGAGGTGAACTTCATC
TTCTCTGAGGACTCCAAGGTGTCAGGACAAAGAGTCGATGGGCTGGCATTTGTGAATGAAGATGTGGTGG
CCTCCAAAGGGAGTGGACAGGGCACCATCTACCTGTGGAGCTGGAGCCAGACATGGGCAGGCCGGGGCAG
ACAGTCTGTGTTGCCCGTAGTCATCCTGGTCCGGCTGCAGTGGTCACCCACCAACCTGGCCTACTTTTCA
CTCAGCACCTGTCCCGGCAAAAACCTCGTGCTGTGTGGGGACGAGGAAGGCAGTGTGTGGATCTATGATG
TTGAACACCTCCTGAAAGAGCCTCCACAGGCAACAACTCTGCAGCCCCCAACACAGATCCTGAAGTGGCC
TCAGCCAACAGCATTGGGCCAACCAGTGACCAAGACCATGATAAACACAGTCGTGGCCAATGCAGCCTTC
ACCTACCTCACTGCCCTGACAGACTCCAACATCGTGTCCATCTGGAGGAGATGCTAG

Translation (648 aa):
MAPLTPQLLLQRGRPKTDKLGKIQSLNLSGLQLLSEHLDPNLLGRLKKLRELDLSNNLLETLPANLGLSH
LRILRCTNNQLGDVTALHQFPELEELNLEGNPFLTVSDNLKVSFLLPKLRKVNGKDTASTCSQVENLDRE
LMDRVTAHWQKFIATVSPEEETDKVRADFMRSAVRDVCYGPESLIEFTQWRVRMIAEELVASGGAQVQDA
KVPVEHPQAAGASKFRAREVASKRPGKDPVTLPPSKRVRALPPAQAEGSPMGADGGQAALHLEPLHFLQC
HSRNNSPKDLETQLWACAFEPAREEGHSRATSQTVATCGGEAVCVIDCQTGLVLHKYKVPGEEFFSVAWT
ALTVVTQAGHKKRWNMLAAAGLRGMVRLLHVRAGFCCSVIRAHKKAIATLCFSPSHETHLFTASYDKRII
LWDIGVPNQDYKFQASQLLTLNCGSVPLRLCPVATCPDDFLLAGCEGGCYCWDVRLDQPQKQRVCEVNFI
FSEDSKVSGQRVDGLAFVNEDVVASKGSGQGTIYLWSWSQTWAGRGRQSVLPVVILVRLQWSPTNLAYFS
LSTCPGKNLVLCGDEEGSVWIYDVEHLLKEPPQATTLQPPTQILKWPQPTALGQPVTKTMINTVVANAAF
TYLTALTDSNIVSIWRRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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