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Report for CCDS20858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20858.1 Public Mus musculus 7 Pnma8a 23 108 98 CCDS HistoryNCBI Gene:71691Re-query CCDS DB by CCDS ID:20858.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038163.7 ENSMUSP00000040929.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038163.7Link to Ensembl Protein Viewer:ENSMUSP00000040929.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038163Re-query CCDS DB by Protein ID:ENSMUSP00000040929
Original member Current member NCBI NM_001007569.2 NP_001007570.1 Accepted alive Link to Nucleotide Sequence:NM_001007569.2Link to Protein Sequence:NP_001007570.1Re-query CCDS DB by Nucleotide ID:NM_001007569Re-query CCDS DB by Protein ID:NP_001007570Link to BLAST:NP_001007570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007570.1 430 Q80VM8 430 100% 0 0

Chromosomal Locations for CCDS 20858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16960222 16961497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16962020 16962036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGTCGGAGCCCGTGGCCATGACCCTGCTGGAAGATTGGTGCAGGGGCATGGGAATGGACATCCACAGAT
CCCTGTTGGTCACTGGGATCCCTGAGTACTGTAGCCACGCAGAAATTGAGGAGACCTTGAATGGGGTCCT
CTTGCCACTGGGCACATACCGTGTGCTCAACAAAATTTTTTTGAGGCAAGAGAACGTGAAGGCTGCTCTA
GTTGAGGTTAGCGAGGGTGTGAATCTGAGCTCTATACCCCGGGAGTTCCCAGGGAGGGGCGGTGTCTGGA
GAGTGGTCTGCAGGGATCCCACCCAGGACGACGACTTTTTAAAAAATCTGAACGAATTCTTGGATGGCGA
AGGACGCACTTGGGAGGATATGGTGCGCCTCTTGAAGCTTAACCCTAACCCACCGCTACCGAATTCAAAC
CAGCCTCCACCGAACTGGGCAGAAGCCCTGGGGTTGCTCCTGGGTGCAGTAGTACAGGTCATATTCTACA
TGGATGCTGCAATCCGTAGTCGGGATGAAGAAGCAAGGGCTGAGGAGGCTGCTGAGGCTGAGTTGATGGA
GGCTTGGGCTTCCACAGCGAGGAAGAGAGTAAAGAAGGAACCCGGGCTGGGCGTCGAAGTGGGCTCAGCT
TTCAAGATGGAGGACCGAAACTATTGGAAGAACACAGAGGACCATGGTGACCCTCCAAAACCTCTAGTTC
GCAGGCCTGGAGGTAAGATTCGCTCCAGGAGGAGGAAGCAGAAAAAAAATCTTAAGCAAGAGCCAATATG
CTGGAGGAAATCCCAGGGCAGCAATTACAACAGCAATTACAATAAGGTTAATTTGGAAGCTGGTGAAGCT
GCCCAGAGCTCAGAGATCCCAGAGTCTGTCAAGAGCAACAAAAAACCCTTTGTGAAGCAGGAAGAGACAG
TATGGAAGAAGAAAAGAGTCTGGAGGGATCCCAGCGATCTTCCTCGGTCTGCGCTGCCTGCAGCTGACAG
CCCCGGGAACCTAGAGGATTCAGATCAAGATGGTGGACCGGAGAACCCCGCAAAGAAGAAAGCCATGACC
TGGGCCTCTAACAAGATCCCTGTCCCCACGAGGAAGAAGAAGAAGATGGTGAGCTTGGGCACTCTCTCCT
ATGTCCTGCTTGATGCTGAAGCCACCAAGAACAAAACAGCGATTCTGAAGAAAGGGCTTGGTGCTAGAAG
GGCTGTGTCGGTACCTCATGATGCACCTGCTTCAACATCCAGGCCTCAGAAGACCAAGCTGGGAGCCTTC
CCTCGAGTCTCCAAAGATTCCAGGAAGCTATGA

Translation (430 aa):
MSEPVAMTLLEDWCRGMGMDIHRSLLVTGIPEYCSHAEIEETLNGVLLPLGTYRVLNKIFLRQENVKAAL
VEVSEGVNLSSIPREFPGRGGVWRVVCRDPTQDDDFLKNLNEFLDGEGRTWEDMVRLLKLNPNPPLPNSN
QPPPNWAEALGLLLGAVVQVIFYMDAAIRSRDEEARAEEAAEAELMEAWASTARKRVKKEPGLGVEVGSA
FKMEDRNYWKNTEDHGDPPKPLVRRPGGKIRSRRRKQKKNLKQEPICWRKSQGSNYNSNYNKVNLEAGEA
AQSSEIPESVKSNKKPFVKQEETVWKKKRVWRDPSDLPRSALPAADSPGNLEDSDQDGGPENPAKKKAMT
WASNKIPVPTRKKKKMVSLGTLSYVLLDAEATKNKTAILKKGLGARRAVSVPHDAPASTSRPQKTKLGAF
PRVSKDSRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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