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Report for CCDS11194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11194.1 Public Homo sapiens 17 TOP3A 24 110 108 CCDS HistoryNCBI Gene:7156Re-query CCDS DB by CCDS ID:11194.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321105.10 ENSP00000321636.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321105.10Link to Ensembl Protein Viewer:ENSP00000321636.5Re-query CCDS DB by Nucleotide ID:ENST00000321105Re-query CCDS DB by Protein ID:ENSP00000321636
Original member Current member EBI ENST00000542570.5 ENSP00000442336.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542570.5Link to Ensembl Protein Viewer:ENSP00000442336.2Re-query CCDS DB by Nucleotide ID:ENST00000542570Re-query CCDS DB by Protein ID:ENSP00000442336
Original member Current member NCBI NM_004618.5 NP_004609.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004618.5Link to Protein Sequence:NP_004609.1Re-query CCDS DB by Nucleotide ID:NM_004618Re-query CCDS DB by Protein ID:NP_004609Link to BLAST:NP_004609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004609.1 1001 Q13472-1 1001 100% 0 0

Chromosomal Locations for CCDS 11194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18274802 18274980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18277675 18278357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18280536 18280658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18282698 18282841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18285142 18285307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18285407 18285520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18290557 18290686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18290842 18291027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18292645 18292852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18294703 18294785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18299559 18299633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18301885 18301985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18302264 18302434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18302580 18302723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18305112 18305220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18306891 18306966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18308351 18308424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18308882 18308941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18314599 18314778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3006 nt):
ATGATCTTTCCTGTCGCCCGCTACGCGCTCCGGTGGCTGCGACGGCCCGAAGACCGTGCCTTTTCCCGCG
CCGCCATGGAGATGGCCCTCCGAGGCGTGCGGAAAGTCCTCTGTGTGGCCGAAAAAAACGACGCGGCCAA
GGGGATCGCCGACCTGCTGTCAAACGGTCGCATGAGGCGGAGAGAAGGACTTTCAAAATTCAACAAGATC
TATGAATTTGATTATCATCTGTATGGCCAGAATGTTACCATGGTAATGACTTCAGTTTCTGGACATTTAC
TGGCTCATGATTTCCAGATGCAGTTTCGAAAATGGCAGAGCTGCAACCCTCTTGTCCTCTTTGAAGCAGA
AATTGAAAAGTACTGCCCAGAGAATTTTGTAGACATCAAGAAAACTTTGGAACGAGAGACTCGCCAGTGC
CAGGCTCTGGTGATCTGGACTGACTGTGATAGAGAAGGCGAAAACATCGGGTTTGAGATTATCCACGTGT
GTAAGGCTGTAAAGCCCAATCTGCAGGTGTTGCGAGCCCGATTCTCTGAGATCACACCCCATGCCGTCAG
GACAGCTTGTGAAAACCTGACCGAGCCTGATCAGAGGGTGAGCGATGCTGTGGATGTGAGGCAGGAGCTG
GACCTGAGGATTGGAGCTGCCTTTACTAGGTTCCAGACCCTGCGGCTTCAGAGGATTTTTCCTGAGGTGC
TGGCAGAGCAGCTCATCAGTTACGGCAGCTGCCAGTTCCCCACACTGGGCTTTGTGGTGGAGCGGTTCAA
AGCCATTCAGGCTTTTGTACCAGAAATCTTCCACAGAATTAAAGTAACTCATGACCACAAAGATGGTATC
GTAGAATTCAACTGGAAAAGGCATCGACTCTTTAACCACACGGCTTGCCTAGTTCTCTATCAGTTGTGTG
TGGAGGATCCCATGGCAACTGTGGTAGAGGTCAGATCTAAGCCCAAGAGCAAGTGGCGGCCTCAAGCCTT
GGACACTGTGGAGCTTGAGAAGCTGGCTTCTCGAAAGTTGAGAATAAATGCTAAAGAAACCATGAGGATT
GCTGAGAAGCTCTACACTCAAGGGTACATCAGCTATCCCCGAACAGAAACAAACATTTTTCCCAGAGACT
TAAACCTGACGGTGTTGGTGGAACAGCAGACCCCCGATCCACGCTGGGGGGCCTTTGCCCAGAGCATTCT
AGAGCGGGGTGGTCCCACCCCACGCAATGGGAACAAGTCTGACCAAGCTCACCCTCCCATTCACCCCACC
AAATACACCAACAACTTACAGGGAGATGAACAGCGACTGTACGAGTTTATTGTTCGCCATTTCCTGGCTT
GCTGCTCCCAGGATGCTCAGGGGCAGGAGACCACAGTGGAGATCGACATCGCTCAGGAACGCTTTGTGGC
CCATGGCCTCATGATTCTGGCCCGAAACTATCTGGATGTGTATCCATATGATCACTGGAGTGACAAGATC
CTCCCTGTCTATGAGCAAGGATCCCACTTTCAGCCCAGCACCGTGGAGATGGTGGACGGGGAGACCAGCC
CACCCAAGCTGCTCACCGAGGCCGACCTCATTGCCCTCATGGAGAAGCATGGCATTGGTACGGATGCCAC
TCATGCGGAGCACATCGAGACCATCAAAGCCCGGATGTACGTGGGCCTCACCCCAGACAAGCGGTTCCTC
CCTGGGCACCTGGGCATGGGACTTGTGGAAGGTTATGATTCCATGGGCTATGAAATGTCTAAGCCTGACC
TCCGGGCTGAACTGGAAGCTGATCTGAAGCTGATCTGTGATGGCAAAAAGGACAAATTTGTGGTTCTAAG
GCAGCAAGTGCAGAAATACAAGCAGGTTTTCATTGAAGCGGTGGCTAAAGCAAAGAAATTGGACGAGGCC
TTGGCCCAGTACTTTGGGAATGGGACAGAGTTGGCCCAGCAAGAAGATATCTACCCAGCCATGCCAGAGC
CCATCAGGAAGTGCCCACAGTGCAACAAGGACATGGTCCTTAAGACCAAGAAGAATGGCGGGTTCTACCT
CAGCTGCATGGGTTTCCCAGAGTGTCGCTCAGCTGTGTGGCTTCCTGACTCGGTGCTGGAGGCCAGCAGG
GACAGCAGTGTGTGTCCAGTTTGTCAGCCACACCCTGTGTACAGGTTAAAGTTAAAGTTTAAGCGCGGTA
GCCTTCCCCCGACCATGCCTCTGGAGTTTGTTTGCTGCATCGGCGGATGCGACGACACCCTGAGGGAGAT
CCTGGACCTGAGATTTTCAGGGGGCCCCCCCAGGGCTAGCCAGCCCTCTGGCCGCCTGCAGGCTAACCAG
TCCCTGAACAGGATGGACAACAGCCAGCACCCCCAGCCTGCTGACAGCAGACAGACTGGGTCCTCAAAGG
CTCTGGCCCAGACCCTCCCACCACCCACGGCTGCTGGTGAAAGCAATTCTGTGACCTGCAACTGTGGCCA
GGAGGCTGTGCTGCTCACTGTCCGTAAGGAGGGCCCCAACCGGGGCCGGCAGTTCTTTAAGTGCAACGGA
GGTAGCTGCAACTTCTTCCTGTGGGCAGACAGCCCCAATCCGGGAGCAGGAGGGCCTCCTGCCTTGGCAT
ATAGACCCCTGGGCGCCTCCCTGGGATGCCCACCAGGCCCAGGGATCCACCTAGGTGGGTTTGGCAACCC
TGGTGATGGCAGTGGTAGTGGCACATCCTGCCTTTGCAGCCAGCCCTCCGTCACACGGACTGTGCAGAAG
GATGGACCCAACAAGGGGCGCCAGTTCCACACATGTGCCAAGCCGAGAGAGCAGCAGTGTGGCTTTTTCC
AGTGGGTCGATGAGAACACCGCTCCAGGGACTTCTGGAGCCCCGTCCTGGACAGGAGACAGAGGAAGAAC
CCTGGAGTCGGAAGCCAGAAGCAAAAGGCCCCGGGCCAGTTCCTCAGACATGGGGTCCACAGCAAAGAAA
CCCCGGAAATGCAGCCTTTGCCACCAGCCTGGACACACCCGTCCCTTTTGTCCTCAGAACAGATGA

Translation (1001 aa):
MIFPVARYALRWLRRPEDRAFSRAAMEMALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKI
YEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQC
QALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQEL
DLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGI
VEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRI
AEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPT
KYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKI
LPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFL
PGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEA
LAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNKDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASR
DSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGGPPRASQPSGRLQANQ
SLNRMDNSQHPQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNG
GSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQK
DGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLESEARSKRPRASSSDMGSTAKK
PRKCSLCHQPGHTRPFCPQNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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