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Report for CCDS52438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52438.1 Public Mus musculus 7 Ano9 23 108 98 CCDS HistoryNCBI Gene:71345Re-query CCDS DB by CCDS ID:52438.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067836.8 ENSMUSP00000067689.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067836.8Link to Ensembl Protein Viewer:ENSMUSP00000067689.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067836Re-query CCDS DB by Protein ID:ENSMUSP00000067689
Original member Current member NCBI NM_178381.3 NP_848468.2 Accepted alive Link to Nucleotide Sequence:NM_178381.3Link to Protein Sequence:NP_848468.2Re-query CCDS DB by Nucleotide ID:NM_178381Re-query CCDS DB by Protein ID:NP_848468Link to BLAST:NP_848468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848468.2 747 P86044 747 100% 0 0

Chromosomal Locations for CCDS 52438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141101900 141101927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141102019 141102131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141102258 141102351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141102425 141102526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141103087 141103234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141103992 141104144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141104242 141104384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141104483 141104580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141104669 141104726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141106763 141106874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141107051 141107087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141107167 141107319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141107396 141107500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141107601 141107683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141107797 141107857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141108046 141108142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141108251 141108385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141108618 141108691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141108785 141108843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141108941 141108987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141110376 141110512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141110631 141110756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141111155 141111229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141117714 141117719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGCAGGATGATGAGAGTTCCCAGATCTTTATGGGGCCAGAAGGGGACCAGTTGCCATTGGTGGAAATGG
GCAGTTGTAAGCCTGAGGCCTCTGATCAATGGGACTGTGTCCTGGTGGCTGACCTCCAGACCCTGAAAAT
CCAGAAGCATGCTCAGAAGCAACTGCAGTTCCTAGAAAACCTCGAGAGCAATGGCTTCCACTTCAAGATG
TTAAAGGACCAGAAGAAGGTGTTCTTTGGGATCCGAGCTGACAGTGACGTCATTGACAAGTACCGGACTC
TCCTCATGAATCCTGAAGATTCTGGCTCCAGAGACGAGCAGAGCTTCAACATAGCTACCACAAGAATCCG
AATTGTGAGCTTTGTCGTGAACAACAAGCTAAAACCTGGTGACACCTTTGAGGACCTGGTGAAGGATGGG
GTTTTTGAGACCATGTTTCTTCTGCACAAGGGAGAACAAAACCTGAAGAATATATGGGCTCGGTGGAGAA
ACATGTTTGAACCACAGCCAATTGATGAAATCAGGGAATACTTTGGCGAGAAGGTGGCTCTGTACTTCAC
CTGGCTTGGCTGGTACACCTACATGCTGGTGCCTGCGGCTGTGGTGGGCCTCATCGTCTTTCTGAGTGGC
TTTGCCCTGTTTGATTCCAGCCAGATCAGCAAAGAGATCTGTAGTGCCAATGATATCTTCATGTGCCCTC
TTGGCGACCACAGTCACAGATACCTGCGACTCTCAGAGATGTGCACTTTCGCAAAGCTCACTCATCTCTT
TGACAACGAGGGCACCGTGCTATTTGCCATCTTCATGGCACTGTGGGCTACGGTCTTCCTGGAGATCTGG
AAGCGAAAGCGTGCCCATGAAGTCCAGAGCTGGAAACTGTATGAATGGGATGAGGAAGAGGAAGAGATGG
CCCTTGAGCTCATTAACTCTCCGCACTATAAGCTGAAAGACCACCGTCACTCCTACCTGAGCAGCACCAT
CATCCTGATCCTGTCCCTGTTCATGATCTGTTTAATGATTGGCATGGCTCATGTGCTGGTTGTCTACCGT
GTGCTGGCTGGAGCCCTCTTCAGCAGCCTCGTGAAGCAGCAGGTGACCACCGCTGTGGTGGTGACTGGGG
CAGTGGTACATTATATAATCATTGTCATCATGACTAAGGTCAACAAATATGTAGCCCTGAAGCTTTGTAA
ATTTGAGGAATCCGGGACCTTCTCAGAGCAAGAGAGGAAGTTCACTGTCAAGTTTTTCATCCTGCAGTTC
TTCGCCCACTTCTCCTCTCTCATCTACATTGCCTTCATTCTGGGCAGGATCAATGGTCACCCTGGGAAAT
CCACGCGCCTGGCTGGCCTGTGGAAGCTGGAGGAGTGCCATCTCAGTGGCTGCATGATGGACCTGTTTAT
CCAGATGGCCATCATCATGGGCCTGAAGCAAACCCTGAGCAACTGCGTTGAGTACCTGTGCCCGTTGTTG
GCCCATAAATGGCGCTTAATGTGGGCTTCCAAACATGGTCACATGTCCAAAGACCCAGAACTGAAGGAGT
GGCAGCGTAACTACTACATGAATCCCATCAACACCTTCAGCCTGTTTGATGAGTTCATGGAGATGATGAT
CCAGTACGGCTTTACCACCATCTTTGTGGCTGCTTTCCCACTCGCACCCCTGTTGGCGCTCTTCAGCAAC
CTTGTGGAAATCCGTCTGGATGCCATCAAGATGGTCAGACTACAGCGGCGCCTGGTTCCTCGCAAGGCTA
AGGACATAGGGACCTGGCTGCAGGTGCTAGAGACCATTGGAGTGCTGGCAGTCATTGCCAATGGAATGGT
TATCGCCTTCACCTCTGAGTTCATCCCCAGGGTAGTCTACAAGTACCACTATGGCCCGTGCCGAACGAAT
CGGACCTTCACAGATGACTGCCTCACGAACTATGTCAACCATAGCTTGTCTGTCTTCTACACCAAACACT
TCAATGACCACAGCAGGATGGAAGGCCAAGAAAACGTGACCGTGTGCAGGTACCGGGACTACCGAAATGA
GCATGACTACAACTTGTCTGAGCAGTTCTGGTTCATTTTGGCCATCCGACTGACCTTTGTTATCCTCTTT
GAGCATTTTGCCCTGTGCATCAAACTCATTGCTGCGTGGTTTGTGCCTGATGTGCCCCAGAAAGTGAAGA
ATGAGGTTCTGCAGGAGAAGTATGACAGAATTCGCCATAGAATGCGCTTCAGTTCCAGGAGCACGGATGT
ATAG

Translation (747 aa):
MQDDESSQIFMGPEGDQLPLVEMGSCKPEASDQWDCVLVADLQTLKIQKHAQKQLQFLENLESNGFHFKM
LKDQKKVFFGIRADSDVIDKYRTLLMNPEDSGSRDEQSFNIATTRIRIVSFVVNNKLKPGDTFEDLVKDG
VFETMFLLHKGEQNLKNIWARWRNMFEPQPIDEIREYFGEKVALYFTWLGWYTYMLVPAAVVGLIVFLSG
FALFDSSQISKEICSANDIFMCPLGDHSHRYLRLSEMCTFAKLTHLFDNEGTVLFAIFMALWATVFLEIW
KRKRAHEVQSWKLYEWDEEEEEMALELINSPHYKLKDHRHSYLSSTIILILSLFMICLMIGMAHVLVVYR
VLAGALFSSLVKQQVTTAVVVTGAVVHYIIIVIMTKVNKYVALKLCKFEESGTFSEQERKFTVKFFILQF
FAHFSSLIYIAFILGRINGHPGKSTRLAGLWKLEECHLSGCMMDLFIQMAIIMGLKQTLSNCVEYLCPLL
AHKWRLMWASKHGHMSKDPELKEWQRNYYMNPINTFSLFDEFMEMMIQYGFTTIFVAAFPLAPLLALFSN
LVEIRLDAIKMVRLQRRLVPRKAKDIGTWLQVLETIGVLAVIANGMVIAFTSEFIPRVVYKYHYGPCRTN
RTFTDDCLTNYVNHSLSVFYTKHFNDHSRMEGQENVTVCRYRDYRNEHDYNLSEQFWFILAIRLTFVILF
EHFALCIKLIAAWFVPDVPQKVKNEVLQEKYDRIRHRMRFSSRSTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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