NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20965.1 Public Mus musculus 7 Dmrtc2 23 108 98 CCDS HistoryNCBI Gene:71241Re-query CCDS DB by CCDS ID:20965.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011493.5 ENSMUSP00000011493.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011493.5Link to Ensembl Protein Viewer:ENSMUSP00000011493.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000011493Re-query CCDS DB by Protein ID:ENSMUSP00000011493
Original member Current member NCBI NM_027732.2 NP_082008.1 Accepted alive Link to Nucleotide Sequence:NM_027732.2Link to Protein Sequence:NP_082008.1Re-query CCDS DB by Nucleotide ID:NM_027732Re-query CCDS DB by Protein ID:NP_082008Link to BLAST:NP_082008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082008.1 370 Q8CGW9 370 100% 0 0

Chromosomal Locations for CCDS 20965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24872482 24872705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24872780 24872934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24873922 24873998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24874198 24874378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24874907 24875033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24875748 24875808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24875949 24876123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24877153 24877265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGACCCCAGTGAAACGGCTGCTCTCCACCACTGTTCTGCTGACTCTTCCCCAGCCGACGAGGCCAGAG
TGCCCCAGAGTACAGAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAACCTGTGCCCGCTGTCGCAA
CCATGGGGTCACAGCCCATCTCAAGGGACACAAGCGCCTCTGCCTCTTTCAGGCTTGCGAGTGTCACAAA
TGTGTCCTCATCCTGGAACGTCGGAGGGTCATGGCTGCCCAAGTGGCCTTGCGCAGGCAGCAGGAGGCAC
AGCTGAAAAGGCACCTGGCTCAGGGACTGATGAAAGGGGCAACCCCTCTGAAAGCTCCCCTCCGTGTCAA
GAAGGGAGCCATTCGGCCAGGGATCCCTTCTGGAAAAGAGAACATAGCACCCCAGCCTCAGAGTCCCCAT
GGAGCAGTCCCACTGGTACTGACACCCCCTGGGAAGGAGAACTATGGGCCACTGCTGCTCAGCCGCCCCC
CGGAAGCCTTGCCTTTGCCCTGGACTCCAGTGCCTCCTGGGCCTTGGGGCCCTGGACACTGGCTGCCCCC
AGGCCTCTCAATGCCACCTCCAGTGGTATGCCGCTTGCTGTGCCAAGAACCTGCTGTCCCTCTACATCCT
TTTCCTGGCTTTGACCCTGGCACCTCTCTCCGGCTGCCCACTCATGGGACCCTCCCGACCTGCCCAGGAT
CTCGCTCAGTACTGACGGCTCCACTTTCTGGGGAGCCCCAAGGACCCCCTAACCTGCCTCACACATGTTC
AACTCTGATACTCCAGTCCTGTGGCACCCCAGACTCTCTTCTGCTACAGCCACAGGCCCCTGGAGCCTCC
TGCCTGGCCTGGACATCTGGCCCCTCGGAGCGGCAGCTGCAGCGGGAGGCAGCTGAGGCCCTTGTAGGTC
TGAAAGACTCATCCCAGGCTCCCCGCCTGACCCCATCTGTCCCCCCTAACCCTGCCTGGATCTCTCTGCT
CCACCCCTGTGGCCCACCAGCTCCTCCTGGGGGAAGAGGATTCCAGCCTGTTGGCCCACCTCTCCGACCC
AGTCCAGGTTCCTCTGTCTCTCTGCACATTGGGCGTCTGGGATCTATCTCCCTCCTCAGCTAG

Translation (370 aa):
MDPSETAALHHCSADSSPADEARVPQSTELIPRRPVSRSPTCARCRNHGVTAHLKGHKRLCLFQACECHK
CVLILERRRVMAAQVALRRQQEAQLKRHLAQGLMKGATPLKAPLRVKKGAIRPGIPSGKENIAPQPQSPH
GAVPLVLTPPGKENYGPLLLSRPPEALPLPWTPVPPGPWGPGHWLPPGLSMPPPVVCRLLCQEPAVPLHP
FPGFDPGTSLRLPTHGTLPTCPGSRSVLTAPLSGEPQGPPNLPHTCSTLILQSCGTPDSLLLQPQAPGAS
CLAWTSGPSERQLQREAAEALVGLKDSSQAPRLTPSVPPNPAWISLLHPCGPPAPPGGRGFQPVGPPLRP
SPGSSVSLHIGRLGSISLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH