NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35042.1 Public Homo sapiens 9 ABHD17B 24 110 108 CCDS HistoryNCBI Gene:51104Re-query CCDS DB by CCDS ID:35042.1Re-query CCDS DB by GeneID:51104See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377041.6 ENSP00000366240.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377041.6Link to Ensembl Protein Viewer:ENSP00000366240.2Re-query CCDS DB by Nucleotide ID:ENST00000377041Re-query CCDS DB by Protein ID:ENSP00000366240
Original member Current member NCBI NM_016014.4 NP_057098.2 Accepted alive Link to Nucleotide Sequence:NM_016014.4Link to Protein Sequence:NP_057098.2Re-query CCDS DB by Nucleotide ID:NM_016014Re-query CCDS DB by Protein ID:NP_057098Link to BLAST:NP_057098.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057098.2 293 Q5VST6-2 293 100% 0 0

Chromosomal Locations for CCDS 35042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71862581 71862607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71866799 71867006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71870083 71870262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71874614 71875080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGAATAATCTTTCATTTAGTGAGCTATGTTGCCTCTTCTGCTGTCCACCTTGTCCAGGGAAGATTGCTT
CAAAATTAGCGTTTTTGCCACCTGATCCAACTTACACACTGATGTGTGATGAAAGCGGAAGCCGTTGGAC
TTTACATCTGTCTGAACGAGCAGACTGGCAGTATTCTTCTAGAGAAAAAGATGCTATTGAGTGTTTCATG
ACTAGAACCAGTAAAGGCAACAGAATTGCTTGTATGTTTGTACGTTGTTCACCCAATGCGAAATACACTT
TACTCTTCTCACATGGAAATGCTGTTGATCTTGGTCAAATGAGCAGCTTTTACATAGGACTAGGATCACG
GATTAATTGTAATATATTCTCATATGATTATTCTGGATATGGTGCCAGTTCCGGGAAACCCACAGAGAAG
AACCTCTATGCAGACATTGAAGCTGCTTGGCTTGCTCTTAGGACAAGATATGGCATTCGCCCTGAAAATG
TGATTATATATGGCCAAAGTATAGGGACAGTACCGTCTGTGGATCTTGCTGCTCGATATGAGAGTGCTGC
TGTTATTCTTCATTCTCCTCTGACTTCGGGAATGCGAGTTGCCTTTCCTGATACCAAGAAGACCTACTGT
TTTGATGCATTCCCAAACATTGACAAAATCTCTAAGATAACCTCTCCAGTATTAATAATTCATGGGACTG
AAGATGAAGTCATTGACTTTTCACATGGCCTCGCATTGTTTGAACGTTGCCAAAGACCTGTGGAGCCTCT
CTGGGTTGAAGGAGCAGGTCACAATGATGTGGAACTTTATGGACAGTATCTTGAAAGGTTGAAACAGTTT
GTGTCACAGGAACTGGTGCAGAAACATAAAGAAGGGAAGTGA

Translation (293 aa):
MNNLSFSELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCDESGSRWTLHLSERADWQYSSREKDAIECFM
TRTSKGNRIACMFVRCSPNAKYTLLFSHGNAVDLGQMSSFYIGLGSRINCNIFSYDYSGYGASSGKPTEK
NLYADIEAAWLALRTRYGIRPENVIIYGQSIGTVPSVDLAARYESAAVILHSPLTSGMRVAFPDTKKTYC
FDAFPNIDKISKITSPVLIIHGTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHNDVELYGQYLERLKQF
VSQELVQKHKEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH