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Report for CCDS50377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50377.1 Public Mus musculus 19 Naa40 23 108 98 CCDS HistoryNCBI Gene:70999Re-query CCDS DB by CCDS ID:50377.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025675.10 ENSMUSP00000025675.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025675.10Link to Ensembl Protein Viewer:ENSMUSP00000025675.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025675Re-query CCDS DB by Protein ID:ENSMUSP00000025675
Original member Current member NCBI NM_027643.1 NP_081919.1 Accepted alive Link to Nucleotide Sequence:NM_027643.1Link to Protein Sequence:NP_081919.1Re-query CCDS DB by Nucleotide ID:NM_027643Re-query CCDS DB by Protein ID:NP_081919Link to BLAST:NP_081919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081919.1 237 Q8VE10-1 237 100% 0 0

Chromosomal Locations for CCDS 50377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7227950 7228091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7228352 7228429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7229722 7229805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7229948 7230106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7230188 7230283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7234104 7234156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7235063 7235158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7240938 7240943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGGGAGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATG
CTGTGTGTGCCAAAGTGGATGCTGCCAACAGGCTTGGAGACCCTCTGGAGGCATTCCCAGTCTTCAAGAA
GTATGACCGCAATGGGTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTG
GACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGATGTATGAGCAAAGTGAGTGGGGCTGGAAGG
ACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCAT
CCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGCTATGAAGTG
CAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCA
ACAGCACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCG
AGAGGCACTGCAGTTTGAAATTGATGACTCTTCACCCAGCATGTCTGGTTGCTGTGGGGAGGACTGTTCC
TATGAGATTCTGAGCCGGAGGACCAAGTTCGGGGACAGTCAGCACTCCCACACAGGCGGCCACTGTGGTG
GCTGTTGCCACTGA

Translation (237 aa):
MGRKSSKAKEKKQKRLEERAAMDAVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVSIECKRVSGLEPATV
DWAFDLTKTNMQTMYEQSEWGWKDREKREEMTDDRAWYLIAWENSSIPVAFSHFRFDVECGDEVLYCYEV
QLESKVRRKGLGKFLIQILQLMANSTQMKKVMLTVFKHNHGAYQFFREALQFEIDDSSPSMSGCCGEDCS
YEILSRRTKFGDSQHSHTGGHCGGCCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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