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Report for CCDS18297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18297.1 Public Mus musculus 4 Ttc39b 23 108 98 CCDS HistoryNCBI Gene:69863Re-query CCDS DB by CCDS ID:18297.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102823.9 ENSMUSP00000099887.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102823.9Link to Ensembl Protein Viewer:ENSMUSP00000099887.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102823Re-query CCDS DB by Protein ID:ENSMUSP00000099887
Original member Current member NCBI NM_027238.2 NP_081514.1 Accepted alive Link to Nucleotide Sequence:NM_027238.2Link to Protein Sequence:NP_081514.1Re-query CCDS DB by Nucleotide ID:NM_027238Re-query CCDS DB by Protein ID:NP_081514Link to BLAST:NP_081514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081514.1 617 Q8BYY4-1 617 100% 0 0

Chromosomal Locations for CCDS 18297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83227134 83227224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83230408 83230524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83232711 83232828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83237242 83237350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83240068 83240194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83241646 83241737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83242139 83242300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83243904 83243963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83244048 83244115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83245030 83245138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83246273 83246338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83247613 83247718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83252986 83253050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83256045 83256112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83260882 83260958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83261826 83261957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83263694 83263801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83271117 83271218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83297928 83297962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83324071 83324112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCGCTCGTGGGCAGCCGAGTGGAATTGGACGCGGACGAGGATATCTTTGAAGATGCCTTGGAGACCA
TCTCTAGATCTCCATCGGACATGGCCACCAGCGGCTTTCACTTTGTACCATGCGAGACCAAACGGACCTC
CAGACAGCTTGGAGCATCTGCTATGGGAAGACCTGAAGGTTCATCAGCCAAGGTGGATCTCAAGAGCGGC
CTGGAGGAGTGTGCAGAGGCACTGAACTTATTTCTAAGTAACAAATTTAAAGATGCCCTAGAGTTGCTAC
GTCCATGGGCCAAGGAGAGCATGTACCACGCCTTGGGCTACAGCACCATTGTGGTGTTGCAGGCTGTCAT
GACCTTCGAGCAGCAGGACATCCAGAATGGCATCTCTGCCATGAAGGACGCTTTACAAACCTGCCAAAAA
TACAGGAAGAAATGCACAGTTGTCGAGTCTTTCTCAAGTCTCCTTTCTCGAGGGTCCCTGGAACAACTGA
GTGAAGAGGAGATGCATGCTGAGATCTGTTACGCCGAGTGTCTCCTACAGAAAGCAGCACTCACATTTGT
GCAGGATGAAAATATGATCAACTTCATCAAAGGTGGACTCAAAATTAGAACAAGTTACCAAATATATAAA
GAGTGCCTTTCCATCCTGCACGTCATTCAGAAGAACAAACAAGAGCAGCACTTCTTCTATGAGTTTGAGG
GAGGAGTCAAGCTTGGAACGGGGGCCTTTAATTTGATGCTCTCTCTTTTACCAGCAAGAATCATCCGGTT
ACTAGAATTTATTGGATTTTCTGGAAACAGGGACCTAGGCCTTCTGCAGCTCCGGGAAGGCGCATCAGGA
AGCAGCATGCGGTCCCCGCTCTGTTGCCTTACCATCCTGGCCTTCCATACCTACATCTCCCTCATTCTCG
GTACAGGAGAAGTGAATGTTGTGGAAGCAGAGAGTCTCCTCGCTCCGTTCCTTCAACAGTTCCCAAATGG
CTCCCTCATACTCTTCTATCATGCCCGAATCGAGCTGCTCAAAGGGAACACTGAAAAGGCTCAAGAAACA
TTTCGAAAGTGCATTTCAGTTCAAGAAGAGTGGAAACAGTTTCACCATCTCTGTTACTGGGAATTAATGT
GGATTCATATATACCAACAAAATTGGATGCAGGCGTATTACTATTCAGACCTACTTTGCAAAGAGAGTAA
ATGGTCCAAGGCAACATATGTGTTCTTGAAAGCTGCTATTTTGAGCATGCTTCCAGAGGAAGAAGTGGCA
GCGACTAAGGAGAATGTGGTGTCTCTGTTTAGACAGGTGGATGGTCTGAAGCAGAGAATCGCGGGGAAAT
CTCTCCCAACAGAGAAGTTCGCTGTGAGGAAGGCGCGGAGGTACTCACCCCCGTCAGGCGTCCCCGGAAA
GCTGGTGATGCCAGCCCTGGAAATGATGTACGTCTGGAATGGCTTTTCAATAGTGGGAAAAAGGAAGGAC
CTTTCTGAAAATCTCTTGGTGACTGTGGAGAAGGCTGAGGAGGCATTGCAGAATCAAGACTTTACTGACT
ACTCTGTGGATGATGAATGCTTGGTGAAATTACTGAAAGGATGCTGCCTCAAGAACTTGGAGCGGCCCTT
GCAAGCTGAGCTGTGTTTCAACCACGTTGTGGAAAGTGAAAAACTATTGAAGTACGACCACTATCTGGTG
CCATTTACGCTGTTTGAGTTGGCATTTTTGTATAAAAGCCAAGGGGAAATTGACAAGGCCATCAAGGTCC
TAGAAACTGCAAGAAATAACTATAAGGATTACTCCCTGGAGTCCAGGCTACACTTCAGAATTCAAGCAGC
TCTTCATCTCTGGAAGAAACCTTCCACGGACTGA

Translation (617 aa):
MALVGSRVELDADEDIFEDALETISRSPSDMATSGFHFVPCETKRTSRQLGASAMGRPEGSSAKVDLKSG
LEECAEALNLFLSNKFKDALELLRPWAKESMYHALGYSTIVVLQAVMTFEQQDIQNGISAMKDALQTCQK
YRKKCTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYK
ECLSILHVIQKNKQEQHFFYEFEGGVKLGTGAFNLMLSLLPARIIRLLEFIGFSGNRDLGLLQLREGASG
SSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLAPFLQQFPNGSLILFYHARIELLKGNTEKAQET
FRKCISVQEEWKQFHHLCYWELMWIHIYQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEEVA
ATKENVVSLFRQVDGLKQRIAGKSLPTEKFAVRKARRYSPPSGVPGKLVMPALEMMYVWNGFSIVGKRKD
LSENLLVTVEKAEEALQNQDFTDYSVDDECLVKLLKGCCLKNLERPLQAELCFNHVVESEKLLKYDHYLV
PFTLFELAFLYKSQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWKKPSTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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