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Report for CCDS30362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30362.1 Public Mus musculus X Pof1b 23 108 98 CCDS HistoryNCBI Gene:69693Re-query CCDS DB by CCDS ID:30362.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039887.3 ENSMUSP00000047655.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039887.3Link to Ensembl Protein Viewer:ENSMUSP00000047655.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039887Re-query CCDS DB by Protein ID:ENSMUSP00000047655
Original member Current member NCBI NM_181579.1 NP_853557.1 Accepted alive Link to Nucleotide Sequence:NM_181579.1Link to Protein Sequence:NP_853557.1Re-query CCDS DB by Nucleotide ID:NM_181579Re-query CCDS DB by Protein ID:NP_853557Link to BLAST:NP_853557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853557.1 587 Q8K4L4 587 100% 0 0

Chromosomal Locations for CCDS 30362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112640436 112640441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112642978 112643092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112644333 112644415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112645247 112645375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112646712 112646831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112647119 112647271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112648060 112648173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112649018 112649110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112656089 112656163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112657452 112657479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112661751 112661881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112664149 112664322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112669034 112669135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112677371 112677451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112683394 112683468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112698170 112698454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGATGAGCTCAAGCTATTGGAGTGAGACCAGCAGCAGCAGCTGCGGGACCCAGCAGCCCACAGAGGTCC
TGCAGTGCCAGCCTCAGCATTACCACTATTACCATCAGCCAAGTCAAGCCCAGCAGCCTCCAGAAAAAAA
TGTAGTGTATGAACGAGTGAGGACCTACAGTGGGCCAATGAACAAGGTGGTGCAGGCCTTGGACCCGCTC
GGCTCACGGGAAGTGCTCTCCCCTCTCAAACCTGCCTCCTCCTACCAAAGTTTGGTTTGGAGCGACCATT
CCCAGGAGCTCTATTCTCCAACTCTGAAAATATCTACTTGTGCACCAAGCACTCTCCACATAACACAAAA
TGCTGAACAGGAACTCCATTCTCCAACAGTGAAAGTTACTACATATCCACAAACCACCATTAGGAGATAC
ATAGTACAAAACCCTGAACAGGAACCATTGTCTCCTTTCCTAAGAGGAAGTCAATTCTTCCCAGGAAACA
ATGTAATTTATGAAAAAACAATAAGAAAAGTGGAGAAGCTCAACACAGATCAAGAATGTTGTCCTCAAAT
TCAGTGCCATCATCATGTCATCCAGCAACCCCAGATCATCCACTCGCCACATTGTCAACAGTCCCATTCT
AGCCATCAAATCCAGTGTATAACAGAAAATGATTCAAATATTGGGCATGAACTCTGTCATGGCGGGCCAA
GCCAAATACACGAACAGGTGATAATTCAGGATGATGGCCCTGAAAAATTGGATCCCAAATATTTTGGAGA
GTTGCTTGCTGATCTAAGTCGCAAGAATACAGACCTATATCACTGCTTATTAGAACATTTGGAGCGAATT
GGAGGAAGCAAACAAGATTTTGAGTCCACAGATACATCAGAAGACATTGAGTCATTGATTCCCAAAGGAC
TGTCAGAGTTTACAAAACAGCAAATTCGTTATATTCTGCAGATGAGGGGTATGTCTGATAAGTCCCTGAG
ACTAGTGCTGTCCACGTTTAGCAACATACGGGAGGAACTTGGACATCTTCAAAATGATTTGACATCACTG
GAAAATGACAAGATAAGACTTGAAAAGGACTTGGCATTCAAAGAAAATCAAATGAAAGAGTATGAAGAAC
TCTTGGCATCAGTGAGAGCAAATAATCGCCAACAGCAACAAGGACTTCAAGACTCAAGCGCAAAATGTCA
GTCATTGGAAGAAAATAACCTTTCTCTTCGACATACACTGTCAGACTTGGAATACAGACTGAAAGAACTT
GAGTATTGTAAACGCAATTTAGAGCAAGAGAATAAAAACCTTAGAATACAGGTGTCTGAGACTTGCACAG
GCCCTACACTACAGGCTAAAATGGATGAGATTGGCAATCATTATATGGAGATGGTAAAAAACTTGAGACT
TGATAAAGATAGAGAAATCAGCAAGCTAAGGTCCCAATTAAACCAGTACCAAAAAGATGTTTCAAAAAGA
GAAGGAAGTTGTAGTGATTTCCAATTCAAACTTCATGAATTGACAAGTTTGCTGGAAGAGAAGGATTCTC
TAATAAAGCGTCAATCAGAGGAACTCTCAAAGTTGAGACAAGAAATATATTCATCCCATAACCAACCCTC
TTGTGGTGGAAGGACTACAATCACCACAAAAAAGTACAGAACACAGTATCCAATCCTAGGTCTCCTGTAC
GATGACTATGAATATATACCACCAGGTAGTGACACACAAACGATTGTGATCGAGAAAACTGAAGACAAAT
GGACTTGTCCATGA

Translation (587 aa):
MMSSSYWSETSSSSCGTQQPTEVLQCQPQHYHYYHQPSQAQQPPEKNVVYERVRTYSGPMNKVVQALDPL
GSREVLSPLKPASSYQSLVWSDHSQELYSPTLKISTCAPSTLHITQNAEQELHSPTVKVTTYPQTTIRRY
IVQNPEQEPLSPFLRGSQFFPGNNVIYEKTIRKVEKLNTDQECCPQIQCHHHVIQQPQIIHSPHCQQSHS
SHQIQCITENDSNIGHELCHGGPSQIHEQVIIQDDGPEKLDPKYFGELLADLSRKNTDLYHCLLEHLERI
GGSKQDFESTDTSEDIESLIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSL
ENDKIRLEKDLAFKENQMKEYEELLASVRANNRQQQQGLQDSSAKCQSLEENNLSLRHTLSDLEYRLKEL
EYCKRNLEQENKNLRIQVSETCTGPTLQAKMDEIGNHYMEMVKNLRLDKDREISKLRSQLNQYQKDVSKR
EGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPSCGGRTTITTKKYRTQYPILGLLY
DDYEYIPPGSDTQTIVIEKTEDKWTCP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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