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Report for CCDS26739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26739.1 Public Mus musculus 13 Slc30a5 23 108 98 CCDS HistoryNCBI Gene:69048Re-query CCDS DB by CCDS ID:26739.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067246.5 ENSMUSP00000065764.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067246.5Link to Ensembl Protein Viewer:ENSMUSP00000065764.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067246Re-query CCDS DB by Protein ID:ENSMUSP00000065764
Original member Current member NCBI NM_022885.2 NP_075023.2 Accepted alive Link to Nucleotide Sequence:NM_022885.2Link to Protein Sequence:NP_075023.2Re-query CCDS DB by Nucleotide ID:NM_022885Re-query CCDS DB by Protein ID:NP_075023Link to BLAST:NP_075023.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075023.2 761 Q8R4H9 761 100% 0 0

Chromosomal Locations for CCDS 26739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100803291 100803461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100803862 100803990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100806534 100806760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100809084 100809279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100811306 100811435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100812648 100812805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100813298 100813506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100813683 100813971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100814596 100814766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100817009 100817085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100818126 100818213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100821119 100821206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100824916 100825001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100826452 100826518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100828900 100829022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100833101 100833177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGGAGGAGAAGTACGGCGGGGACGCGCGGCCCGGGCCCGGCGGTGGCCTCGGGCCGGTGGACGTGCCCA
GCGCCCGATTAACAAGATACATTTTATTGCTGTGTTTAACCAAATGTTTGAAGGCTGTGGGACTTTTTGA
ATCATATGATCTCCTAAAAGCTGTTCACATTGTTCAATTTATTTTTATATTAAAACTTGGGACTGCATTT
TTTATGGTTTTGTTTCAAAAACCGTTTTCTTCTGGGAAACCTATTACAAAGCATCAGTGGATCAAAATAT
TTAAACATGCAGTTGCTGGATGTATCATATCACTTTTATGGTTTTTTGGCCTTACTCTTTGTGGACCACT
AAGGACCTTGCTGCTGTTTGAACACAGTGACATTGTCGTAATCTCTCTGCTCAGTGTTCTGTTCACTAGC
TCTGGAGGAGGACCAGCAAAGACAAGAGGGGCTGCTTTTTTCATTATTGCTGTGATCTGCTTACTGCTTT
TCGACAATGATGATCTCATGGCAAAGATGGCTGAACACCCGGAAGGACATCATGATAGTGCTCTAACTCA
CATGCTCTATACAGCCATTGCCTTTTTAGGGGTGGCAGATCACAAGGGTGGAGTACTCTTGCTGGTGCTG
GCTTTATGTTGTAAAGTTGGTTTTCATACGGCTTCCAGAAAGCTCTCTATAGATGTTGGTGGAGCTAAGC
GCCTTCAGGCCTTATCTCAGCTTGTTTCTGTGTTTCTCCTGTGCCCATGGGTGATTGTTCTTTCTGTGAC
GACTGAGAGTAAGGTTGAGTCTTGGTTCTCTCTCATCATGCCTTTCACCACAGTCATCTTTTTTGTCATG
ATCCTGGATTTCTATATGGATTCTGTTTGTTCAGTCAAAATGGACGTGTCCAAATGTGCCCGCTATGGGT
CCTTTCCCATTTTTATTAGTGCCCTCCTGTTTGGAAATTTCTGGACACACCCAATAACAGACCAACTCCG
GGCTATGAACAGAGCAGCACACCAGGAGAGCACAGAGCACGTCCTGTCTGGAGGAGTGGTAGTGAGCGCT
GTGTTCTTCATTTTGTCGGCCAACATTCTATCATCTCCCTCTAAGAGAGGACAGAAAGGTACCCTTATTG
GATATTCTCCTGAAGGAACACCACTCTATCACTTCATGGGGGACGCTTTTCAGCACAGCTCTCAGTCGGT
GCCTAGGTTCATTAAGGACTCACTAAAGCAGGTTCTCGAGGAGAGCGACTCTAGGCAGATCTTTTACTTC
TTGTGCTTGAATCTGCTTTTTACCTTTGTGGAGTTGTTCTATGGCGTGCTAACCAACAGTCTAGGCCTGA
TCTCAGATGGATTTCACATGCTCTTTGACTGCTCGGCTTTGGTCATGGGACTGTTTGCTGCCCTGATGAG
CCGCTGGAAAGCCACCCGGATTTTCTCCTATGGGTATGGCCGAATAGAGATTCTCTCTGGCTTTATTAAT
GGGCTTTTTCTGATCGTGATAGCATTTTTTGTGTTTATGGAATCAGTGGCTAGACTGATCGATCCTCCGG
AACTAGACACAAACATGCTGACACCAGTTTCCGTCGGAGGGCTGATAGTAAACCTTATTGGTATCTGTGC
CTTCAGCCACGCCCACAGCCATGGCCATGGCGCTTCTCAAGGAAACTGCCACTCTGATCACGGCCATTCA
CACCATGCACATGGACACGGCCATGATCACGGTCACAGCCACGGCTTCACGGGTGGAGGCATGAATGCGA
ACATGAGGGGTGTATTTCTCCATGTGTTGGCAGACACACTGGGCAGCATCGGCGTGATTGTGTCCACAGT
TCTCATAGAGCAGTTTGGATGGTTCATTGCTGATCCCCTGTGTTCTCTTTTTATTGCCGTGTTGATATTT
CTCAGTGTGATCCCACTGATTAAAGATGCCTGTCAAGTTCTACTTCTGAGACTACCACCTGACCATGAAA
AAGAACTGCATATTGCTTTAGAAAAGATACAGAAAATTGAGGGATTAATATCATACCGAGACCCTCATTT
TTGGCGCCATTCTGCCAGTATTGTAGCGGGAACAATTCATATACAAGTGACATCTGAGGTGCTGGAGCAG
AGAATTGTACAGCAGGTTACAGGGATACTTAAAGATGCAGGAGTAAACAACCTAACCATACAAGTGGAAA
AGGAGGCATACTTTCAGCATATGTCCGGCCTGAGTACTGGATTTCATGATGTTCTGGCTATGACGAAGCA
GATGGAATCCCTGAAATACTGCAAAGATGGCACTTACATCATGTGA

Translation (761 aa):
MEEKYGGDARPGPGGGLGPVDVPSARLTRYILLLCLTKCLKAVGLFESYDLLKAVHIVQFIFILKLGTAF
FMVLFQKPFSSGKPITKHQWIKIFKHAVAGCIISLLWFFGLTLCGPLRTLLLFEHSDIVVISLLSVLFTS
SGGGPAKTRGAAFFIIAVICLLLFDNDDLMAKMAEHPEGHHDSALTHMLYTAIAFLGVADHKGGVLLLVL
ALCCKVGFHTASRKLSIDVGGAKRLQALSQLVSVFLLCPWVIVLSVTTESKVESWFSLIMPFTTVIFFVM
ILDFYMDSVCSVKMDVSKCARYGSFPIFISALLFGNFWTHPITDQLRAMNRAAHQESTEHVLSGGVVVSA
VFFILSANILSSPSKRGQKGTLIGYSPEGTPLYHFMGDAFQHSSQSVPRFIKDSLKQVLEESDSRQIFYF
LCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATRIFSYGYGRIEILSGFIN
GLFLIVIAFFVFMESVARLIDPPELDTNMLTPVSVGGLIVNLIGICAFSHAHSHGHGASQGNCHSDHGHS
HHAHGHGHDHGHSHGFTGGGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIADPLCSLFIAVLIF
LSVIPLIKDACQVLLLRLPPDHEKELHIALEKIQKIEGLISYRDPHFWRHSASIVAGTIHIQVTSEVLEQ
RIVQQVTGILKDAGVNNLTIQVEKEAYFQHMSGLSTGFHDVLAMTKQMESLKYCKDGTYIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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