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Report for CCDS35776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35776.1 Public Mus musculus 1 Klhdc9 23 108 98 CCDS HistoryNCBI Gene:68874Re-query CCDS DB by CCDS ID:35776.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061878.4 ENSMUSP00000056212.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061878.4Link to Ensembl Protein Viewer:ENSMUSP00000056212.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061878Re-query CCDS DB by Protein ID:ENSMUSP00000056212
Original member Current member NCBI NM_001033039.2 NP_001028211.1 Accepted alive Link to Nucleotide Sequence:NM_001033039.2Link to Protein Sequence:NP_001028211.1Re-query CCDS DB by Nucleotide ID:NM_001033039Re-query CCDS DB by Protein ID:NP_001028211Link to BLAST:NP_001028211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028211.1 350 Q3USL1 350 100% 0 0

Chromosomal Locations for CCDS 35776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171358814 171358980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171359455 171359653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171359742 171359901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171360135 171360661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCTGGGGTGCAGACCCTCGGTCGAGCAAGAGGCTCAACCTGGACCTGGAGGCCAGTGGCGCGAGACG
TGCTTCTGGCTCGTGCCTTCCATTCATGCACGGAACTGGAAGGACGGTTCTATCTGGTAGGGGGTCTCCT
AGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGA
CTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCG
TGGTGGGTGGCTGGGACGGGTCACGTCGCTTATCCACGGTGGCCGCGCTGGACACGGAGAGAGAGGTGTG
GGAAGCATGGGCTGCGAACCCTGGCAACTGCCCTCCTGCTGGCCTCAGCAGCCACACCTGCACTCGCCTC
TCAGACGGGGAGCTGCGAGTGTCTGGCAGAGAGGGTGGTACCCACACTCAGCGACGCTACGGAAGCATCT
ACACGTTAAAGTTGGACCACAGGACCCGAACTTATTGCTACAAAGAAGAAGGCTGCCACACAACCTCACG
ATCAGGCCACTGTGCTGCCCTGCTGCCAACTGCTGGGCCGCACCCGGGTCATCAGCTTTTGCTCTTTGGG
GGCTGCAACTCAGTTGGACCGGAGGTAGCAGGGCAATGGAGCCCTGGGAAAATCAAGGAGGAACAACCAG
TTGCCCCTCATTTGAGGGAACAGCTTGCAAGGCTTGTGAGCAGTGGGCAGGGACTGCAGCAAGGACCCCA
GAGCCTGCGCCATCATTCCTGTTCAGTGGTGGGACCCTTCGCTGTACTATTTGGCGGAGAAACTCTGACC
AGAGCTAGAGATACGATCTGCAATGATCTCTACATCTACGATACCCGCAAGTCTCCGCCTCTGTGGTTCC
ACTTCCCCAGTACAGACCGTGGACTGAAGCGCGTGGGCCATCGGACTTGCCTTTGGAATGACCAGCTTTA
TTTGGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAGGTTTGCATCCTGGAATTCTTCATC
TAA

Translation (350 aa):
MAGVQTLGRARGSTWTWRPVARDVLLARAFHSCTELEGRFYLVGGLLEGGARVPSNDTVIFDPAVGQAVR
LVARGSPLRSHHDAALVGGRWLCVVGGWDGSRRLSTVAALDTEREVWEAWAANPGNCPPAGLSSHTCTRL
SDGELRVSGREGGTHTQRRYGSIYTLKLDHRTRTYCYKEEGCHTTSRSGHCAALLPTAGPHPGHQLLLFG
GCNSVGPEVAGQWSPGKIKEEQPVAPHLREQLARLVSSGQGLQQGPQSLRHHSCSVVGPFAVLFGGETLT
RARDTICNDLYIYDTRKSPPLWFHFPSTDRGLKRVGHRTCLWNDQLYLVGGFGEDGRTASPQVCILEFFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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