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Report for CCDS22927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22927.1 Public Mus musculus 9 Anln 23 108 98 CCDS HistoryNCBI Gene:68743Re-query CCDS DB by CCDS ID:22927.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040912.8 ENSMUSP00000045873.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040912.8Link to Ensembl Protein Viewer:ENSMUSP00000045873.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040912Re-query CCDS DB by Protein ID:ENSMUSP00000045873
Original member NCBI NM_028390.3 NP_082666.2 Updated not alive Link to Nucleotide Sequence:NM_028390.3Link to Protein Sequence:NP_082666.2Re-query CCDS DB by Nucleotide ID:NM_028390Re-query CCDS DB by Protein ID:NP_082666
Current member NCBI NM_028390.4 NP_082666.2 Accepted alive Link to Nucleotide Sequence:NM_028390.4Link to Protein Sequence:NP_082666.2Re-query CCDS DB by Nucleotide ID:NM_028390Re-query CCDS DB by Protein ID:NP_082666Link to BLAST:NP_082666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082666.2 1121 Q8K298 1121 100% 0 0

Chromosomal Locations for CCDS 22927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22333050 22333173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22334002 22334174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22337932 22338039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22339002 22339088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22350920 22351032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22351876 22351897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22352214 22352252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22352783 22352839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22353330 22353378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22356052 22356178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22358120 22358302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22358613 22358748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22360410 22360557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22360822 22360967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22362686 22362921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22363990 22364100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22368386 22368512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22372156 22372263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22373141 22373331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22374927 22375140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22376137 22376522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22380050 22380355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22382171 22382327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22388970 22388987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3366 nt):
ATGGACCCGTTTACCGAGAAGTTGCTAGAACGAACTCGTGCCAGACGAGAGAATCTTCAGAGAAAAATGG
CTGAGAGGCCTACGGCAGTAGCGAGATCTGCCCCGCATGCGAAGAGAGGCAGAGAGCCACTTTCAGAAGC
AAGTAATCAGCAGCAGCCCCTACCAGGGGGCGAAGAAAAATCTTGTACAAAACCATCACCATCAAAAAAA
CGTTGTTCTGACAAAATTGAAGTGGGAGCTCCGGACTTAGAAAATACAGAACCTATTGATGTTGCAAAGC
CCTGTTCTCCGATGCCTGCACCCCGGCAGGCGAAGCCCCCAGCACCAGCTGCCATCAGCGAGTCTGTGGC
TGCCCCAGCAGCCCTGCTCAGCGCGGACAGAGGGCTGAACTCAGGATCCGAAGCATCTGCAACCTCCTCA
GTTAAAACTCGAATGCAAAGGCTTGCTGAGCAGCGGCGCCATTGGGATAGTGATCTCACAGATGATGTAT
CAGAAAGTTCATACTTTGCACCAGTGCCAACTGAGGACAAGGCTGCCTCACCTTCTAAGCCACCCATTTC
AAATGCCTCAGCTACTCCAGTTGGGAGAAGGGGCCGTCTGGCCAACCTTGCTGCAACGATTTGCTCCTGG
GAAGATGATGTAAGCCACTCATCTGCAAAGCAAAATAGTGTGCAAGAACAGCCTGGTACCGCTTGTTTAT
CCAAATCTTCCTCTGCAAGTGGAGCATCTGCTAGCATCAATAGCAGCAGTGTTCAGCAGGAAGCTACATG
CTGTTCCCCAAGGGACGGCAATGCCTCTGTCAGGAAAGACCCATCTTCAAATGCTGCCCATGGACCTTTG
CTTAGCGCCTCAGTGTCCAGCTCTGTGAAAGCGTCTTCCCCTGTGACAGCTGCTACCTTCATCACTGAAA
ACCGTGAGGCACAAAATCCTGAGCTACTTCACAAAACTGCTAGTCCTCTGAAAACAGAGGCGCGGAAACC
ATGTGAGAAGCCAACTTTGTCCCAGGGAGCTCAGCCCAAAGAGGAGGCTAACAGAGAAGTTTGTCTACAG
TCACAATCCAAGGACAAACTTGCAACACCAGGAGGAAGAGGAATTAAGCCTTTCCTGGAACGCTTTGGAG
AGCGTTGTCAAGAACACAGTAAAGAAAGTCCGTCTTATAGAGCATCTCATAAAACCCCAAATATCACTCC
AAATACAAAAGCCATCCAGGAAAGATTATTCAAACAAAACACATGCTCGTCTACTACCCATTTAGCACAG
CAGCTCAAACAGGAACGTGAAAAAGAACTGGCATGTCTTCGTGGTCGACTTGACAAGGGCAATTTATGGA
GTGCAGAAAAGAATGAAAAGTCAAGAAGCAAGCATCTAGAAACCAAACAGGAAGTTCACTGTCAGAACAC
TCCACTCAAGAAACATCAAACTGTCGCAAGCACCCCATTGACTTCTGTAACAGATAAGGTGGCTGAAAAT
GAACCAGCAGTGAAGCTTTCTAGCACAGAGCCTGCAGGTTCCACTGAAAGCGAAATGACAAAGTCCAGCC
CTTTGAAAATCACGTTGTTTTTAGAAGAAGAAAAATCCTTAAAAGTAGCATCAGACCTGGAGGTTGAGCA
GAACACTGAAGCAGTGCGTGAGGTTGAGATGAGTGTGGACGATGAGGACATCAATAGCTCCAGAGTCATT
AACGACATCTTCAGTGACGTCCTAGAGGAAGGGGAGCTGGATGTGGAAAAGAGCCAAGAGGAGATGGACC
AAGTGGGAGCAGAAAACAGTGAGGAGCAGGAAGATGCGCTCAATATCTCTTCAATGTCTTTACTTGCTCC
GCTAGCTCAGACGGTCGGTGTGGTGAGCCTAGAGAATGTAATTTCTTCACCTCCGTCGGAATTGAGAGAC
TCTAACCTAAGCGCTGCAAGTCCTAAGCCCGGGAAATTCCAGAGAACCCGCGTCCCTCGCGCCGAATCTG
CCGATAGCCTCGGTTCTGAGGACCGGGACCTTCTCTATAGCATTGATGCATATAGGTCTCAAAGATTCAA
AGAAACAGAACGCCCTTCCATAAAGCAAGTGATTGTTCGAAAGGAAGATGTTACTTCAAAGTTGGGTGAA
AAGAAAAACGTATTTTCTGGTCAAGTTAATATCAAACAAAAAATGCAGGAGCTCAATAATGACATAAATT
TGCAGCAGACAGTGATCTATCAGGCCAGTCAGGCTCTCAACTGCTGTGTGGATGAAGAACACGGGAAAGG
ATCCTTGGAAGAAGCTGAAGCAGAAAGACTTCTTCTGATTGCAACTGAGAAAAGAGCACTTCTGATTGAT
GAGCTGAATAAGCTGAAGAGTGAAGGACCTCAGAGGAGAAACAAGACCAGTGTCATATCCCAGAGTGAAT
TTGCTCCATCTAAAGGGTCAGTCACTCTGTCAGAAATCTGCTTGCCTCTGAAGGCAGATTTTGTCTGCAG
CACTGCGCAAAAAACAGATGCATCAAATTATTACTACTTAATTATGCTAAAAGCTGGGGCTGAGCAGATG
GTCGCCACTCCATTAGCAAGTACTGCAAACTCTCTCAGTGGTGACGCTCTGACATTTCCTACTACATTTA
CTCTGCATGATGTTTCCAATGACTTTGAAATAAACATTGAAGTTTACAGCCTGGTACAAAAGAAAGATTC
CTTGGGCCCCGATAAGAAGAAGAAAGCCTCCAAGTCCAAGGCTATTACTCCAAAGAGACTCCTCACATCT
ATAACTTCAAAAAGCAGCCTTCATTCTTCAGTTATGGCCAGTCCCGGAGGTCTCGGTGCTGTGCGTACCA
GCAACTTTACCCTAGTTGGATCTCACACACTCTCCTTATCTTCTGTTGGAGACACTAAGTTTGCTTTGGA
CAAGGTACCTTTTTTGTCTCCGTTGGAAGGTCACATCTGTTTAAAAATAAGCTGTCAAGTGAATTCAGCT
GTTGAGGAAAAGGGTTTCCTTACCATATTTGAAGATGTTAGTGGCTTTGGTGCCTGGCACCGAAGATGGT
GTGTTCTCTCTGGCAACTGTATCTCTTACTGGACTTACCCAGATGATGAGAGGCGAAAGAATCCCATAGG
AAGGATAAATCTGGCCAATTGTATCAGTCATCAGATAGAACCAGCCAACAGAGAATTTTGTGCAAGACGC
AACACTCTGGAATTGATTACTGTCCGACCACAAAGAGAAGACGATCGAGAAACTCTTGTCAGCCAATGTA
GAGACACACTCTGTGTCACCAAGAACTGGCTCTCTGCAGATACTAAAGAAGAGCGGGATCTCTGGATGCA
GAAACTCAACCAGGTCATTGTTGATATTCGCCTCTGGCAGCCTGATGCATGCTACAAGCCTGTTGGGAAG
CCTTAA

Translation (1121 aa):
MDPFTEKLLERTRARRENLQRKMAERPTAVARSAPHAKRGREPLSEASNQQQPLPGGEEKSCTKPSPSKK
RCSDKIEVGAPDLENTEPIDVAKPCSPMPAPRQAKPPAPAAISESVAAPAALLSADRGLNSGSEASATSS
VKTRMQRLAEQRRHWDSDLTDDVSESSYFAPVPTEDKAASPSKPPISNASATPVGRRGRLANLAATICSW
EDDVSHSSAKQNSVQEQPGTACLSKSSSASGASASINSSSVQQEATCCSPRDGNASVRKDPSSNAAHGPL
LSASVSSSVKASSPVTAATFITENREAQNPELLHKTASPLKTEARKPCEKPTLSQGAQPKEEANREVCLQ
SQSKDKLATPGGRGIKPFLERFGERCQEHSKESPSYRASHKTPNITPNTKAIQERLFKQNTCSSTTHLAQ
QLKQEREKELACLRGRLDKGNLWSAEKNEKSRSKHLETKQEVHCQNTPLKKHQTVASTPLTSVTDKVAEN
EPAVKLSSTEPAGSTESEMTKSSPLKITLFLEEEKSLKVASDLEVEQNTEAVREVEMSVDDEDINSSRVI
NDIFSDVLEEGELDVEKSQEEMDQVGAENSEEQEDALNISSMSLLAPLAQTVGVVSLENVISSPPSELRD
SNLSAASPKPGKFQRTRVPRAESADSLGSEDRDLLYSIDAYRSQRFKETERPSIKQVIVRKEDVTSKLGE
KKNVFSGQVNIKQKMQELNNDINLQQTVIYQASQALNCCVDEEHGKGSLEEAEAERLLLIATEKRALLID
ELNKLKSEGPQRRNKTSVISQSEFAPSKGSVTLSEICLPLKADFVCSTAQKTDASNYYYLIMLKAGAEQM
VATPLASTANSLSGDALTFPTTFTLHDVSNDFEINIEVYSLVQKKDSLGPDKKKKASKSKAITPKRLLTS
ITSKSSLHSSVMASPGGLGAVRTSNFTLVGSHTLSLSSVGDTKFALDKVPFLSPLEGHICLKISCQVNSA
VEEKGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDERRKNPIGRINLANCISHQIEPANREFCARR
NTLELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVIVDIRLWQPDACYKPVGK
P


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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