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Report for CCDS34204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34204.1 Public Homo sapiens 5 CHD1 24 110 108 CCDS HistoryNCBI Gene:1105Re-query CCDS DB by CCDS ID:34204.1Re-query CCDS DB by GeneID:1105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614616.5 ENSP00000483667.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614616.5Link to Ensembl Protein Viewer:ENSP00000483667.1Re-query CCDS DB by Nucleotide ID:ENST00000614616Re-query CCDS DB by Protein ID:ENSP00000483667
Original member Current member NCBI NM_001270.4 NP_001261.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270.4Link to Protein Sequence:NP_001261.2Re-query CCDS DB by Nucleotide ID:NM_001270Re-query CCDS DB by Protein ID:NP_001261Link to BLAST:NP_001261.2
Original member Current member NCBI NM_001376194.2 NP_001363123.1 Accepted alive Link to Nucleotide Sequence:NM_001376194.2Link to Protein Sequence:NP_001363123.1Re-query CCDS DB by Nucleotide ID:NM_001376194Re-query CCDS DB by Protein ID:NP_001363123Link to BLAST:NP_001363123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001261.2 1710 O14646-1 1710 100% 0 0
NP_001363123.1 1710 O14646-1 1710 100% 0 0

Chromosomal Locations for CCDS 34204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 98856380 98856725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98858180 98858390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98858964 98859015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98859972 98860068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98863408 98863586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98868495 98868635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98869754 98869882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98870687 98870803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98872051 98872201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98872417 98872555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98873593 98873723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98875072 98875113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98876398 98876558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98879552 98879728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881076 98881171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881279 98881375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881975 98882123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98883088 98883237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98885578 98885649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98888088 98888240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98889076 98889238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98892525 98892713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98893416 98893606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98894597 98894686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98896226 98896442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98897193 98897320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98898256 98898434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98898664 98898764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98899480 98899705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98900811 98901082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98901186 98901335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98902900 98902964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98903792 98903908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98904897 98905098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98926334 98926386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5133 nt):
ATGAATGGACACAGTGATGAAGAAAGTGTTAGAAACAGTAGTGGAGAATCAAGCCAGTCGGATGATGATT
CTGGGTCAGCTTCAGGCTCTGGATCTGGTTCGAGTTCTGGAAGCAGTAGTGATGGAAGCAGTAGCCAGTC
AGGTAGCAGTGACTCTGACTCCGGATCTGAATCAGGCAGTCAGTCAGAGTCTGAGTCAGACACTTCCCGA
GAAAACAAAGTTCAAGCAAAACCACCGAAAGTTGATGGAGCTGAGTTTTGGAAATCTAGTCCTAGTATTC
TGGCCGTTCAGAGATCTGCAATCCTCAAGAAGCAGCAACAGCAGCAGCAGCAACAACAACATCAAGCCTC
ATCTAATAGCGGATCAGAAGAGGATTCCTCTAGCAGTGAAGATTCCGATGACTCATCAAGTGAGGTCAAA
AGGAAAAAGCATAAAGATGAAGATTGGCAAATGTCTGGGTCAGGATCTCCATCTCAGTCTGGTTCAGATT
CAGAATCTGAAGAAGAGAGAGAGAAAAGCAGTTGTGATGAAACAGAATCTGATTATGAGCCAAAAAACAA
AGTCAAAAGCAGAAAACCTCAAAATAGATCTAAGTCAAAAAATGGAAAGAAGATTCTTGGACAAAAAAAG
AGACAGATTGATTCATCTGAGGAGGATGATGATGAAGAAGATTATGATAATGATAAAAGAAGTTCTCGTC
GCCAAGCAACTGTTAATGTTAGCTATAAGGAGGATGAAGAAATGAAAACAGATTCTGATGACCTACTGGA
AGTCTGTGGAGAGGATGTTCCTCAACCTGAGGAAGAGGAATTTGAAACCATAGAAAGATTTATGGATTGT
CGGATTGGGAGAAAAGGAGCTACTGGTGCTACTACAACCATCTATGCAGTTGAAGCAGATGGTGACCCAA
ATGCAGGCTTTGAAAAAAACAAAGAACCAGGAGAGATTCAGTATTTAATTAAATGGAAAGGATGGTCCCA
TATCCACAACACTTGGGAGACAGAAGAAACCCTCAAGCAGCAGAATGTTAGAGGAATGAAAAAATTGGAT
AATTATAAGAAAAAAGATCAGGAAACAAAAAGATGGTTGAAAAATGCCTCTCCAGAAGATGTGGAATATT
ATAATTGCCAGCAAGAACTTACAGATGATCTACATAAACAGTATCAAATAGTGGAACGTATAATTGCTCA
TTCCAATCAAAAGTCAGCAGCTGGTTATCCTGATTATTACTGCAAATGGCAGGGCCTTCCATACTCAGAG
TGCAGCTGGGAAGATGGAGCTCTCATTTCCAAAAAGTTTCAAGCATGCATTGATGAGTATTTTAGCAGGA
ACCAATCAAAAACCACTCCTTTTAAAGATTGCAAAGTATTAAAACAAAGGCCAAGGTTTGTAGCCCTGAA
GAAGCAGCCATCCTATATTGGAGGACATGAGGGCTTAGAATTAAGAGATTATCAACTGAATGGTTTAAAT
TGGCTTGCTCATTCTTGGTGCAAAGGAAATAGTTGCATACTCGCTGATGAAATGGGCCTTGGAAAAACAA
TACAGACGATCTCATTTCTGAATTATTTGTTTCATGAACATCAATTATATGGACCTTTTTTATTGGTAGT
ACCGCTCTCCACTCTTACTTCCTGGCAAAGGGAAATTCAGACTTGGGCTTCTCAAATGAATGCTGTGGTT
TATTTAGGTGACATTAACAGCAGAAACATGATAAGAACTCATGAATGGACGCATCATCAGACCAAACGGT
TAAAATTTAATATATTGTTAACAACTTATGAAATTTTATTAAAAGATAAGGCATTCCTTGGAGGTCTAAA
TTGGGCATTTATAGGTGTTGATGAAGCACACCGATTAAAGAATGATGACTCCCTTCTGTATAAAACTTTA
ATAGATTTTAAATCCAATCATCGTCTCCTTATCACTGGAACTCCTCTACAGAATTCCCTCAAAGAGCTCT
GGTCTTTGCTACATTTCATTATGCCAGAAAAGTTTTCTTCCTGGGAAGATTTTGAAGAAGAACATGGCAA
AGGGAGAGAATATGGTTATGCAAGCCTTCACAAGGAGCTTGAGCCATTTCTGTTACGCCGAGTTAAGAAA
GATGTGGAAAAATCTCTTCCTGCCAAGGTTGAGCAGATTTTAAGAATGGAAATGAGTGCTTTACAGAAAC
AATATTACAAATGGATTTTAACTAGGAATTACAAAGCCCTCAGCAAAGGTTCCAAGGGCAGTACCTCAGG
CTTTTTGAACATTATGATGGAGCTAAAGAAATGTTGTAACCATTGCTACCTCATTAAACCACCAGATAAT
AATGAATTCTATAATAAACAGGAGGCCTTACAACACTTAATTCGTAGTAGCGGAAAATTGATTCTTCTTG
ACAAGCTATTAATTCGCCTAAGAGAACGAGGCAATCGAGTTCTTATTTTTTCACAAATGGTGCGGATGTT
AGATATACTTGCAGAATATTTGAAATATCGTCAATTCCCCTTTCAAAGATTAGATGGATCAATAAAAGGA
GAACTGAGGAAACAAGCTCTAGATCATTTTAATGCTGAGGGATCAGAGGATTTTTGCTTTTTGCTGTCCA
CAAGAGCTGGAGGTCTAGGGATTAATTTAGCCTCTGCTGACACTGTTGTTATATTTGATTCCGATTGGAA
TCCACAGAATGATCTTCAGGCACAGGCTAGAGCCCATCGAATTGGGCAAAAGAAACAGGTGAATATTTAT
CGTCTAGTTACAAAGGGATCAGTTGAAGAAGATATTCTTGAAAGGGCGAAAAAGAAGATGGTTTTAGATC
ATCTTGTAATTCAAAGAATGGACACAACTGGGAAGACAGTACTACATACAGGTTCTGCCCCATCAAGTTC
TACTCCTTTCAATAAAGAAGAGTTATCAGCCATTTTAAAGTTTGGTGCTGAAGAACTTTTTAAGGAACCT
GAAGGAGAAGAACAAGAGCCCCAGGAAATGGATATAGATGAAATCTTGAAGAGAGCTGAAACTCATGAAA
ATGAACCAGGTCCTTTAACTGTAGGAGATGAATTGCTTTCCCAGTTCAAGGTTGCCAACTTCTCAAATAT
GGATGAGGATGACATTGAGTTGGAACCTGAAAGAAATTCAAAGAATTGGGAGGAAATTATTCCAGAAGAT
CAAAGAAGACGATTAGAAGAAGAAGAAAGACAAAAGGAACTTGAAGAAATTTATATGCTCCCAAGAATGA
GAAATTGTGCAAAACAGATTAGTTTCAATGGAAGTGAAGGGAGGCGCAGTAGAAGTAGGAGATACTCTGG
ATCTGATAGTGATTCCATCTCAGAAGGGAAAAGGCCAAAGAAACGTGGAAGACCACGGACTATTCCTCGG
GAGAATATTAAAGGATTTAGTGATGCAGAAATTAGGCGGTTTATCAAGAGCTATAAGAAATTTGGTGGTC
CTCTGGAAAGATTAGATGCAATTGCTCGAGATGCTGAGTTAGTTGATAAGTCAGAAACAGACCTTAGACG
ACTGGGAGAATTGGTACATAATGGTTGCATTAAAGCATTAAAGGATAGTTCTTCAGGAACAGAACGAACA
GGTGGTAGACTCGGAAAAGTGAAGGGTCCAACATTCCGAATATCAGGAGTACAGGTGAATGCCAAACTAG
TCATCTCCCATGAAGAAGAATTAATACCTTTGCACAAATCCATTCCTTCTGATCCAGAAGAAAGAAAGCA
GTATACTATCCCATGCCACACAAAGGCAGCTCATTTTGATATAGACTGGGGCAAAGAAGATGATTCCAAT
TTGTTAATTGGCATCTATGAATATGGATATGGAAGCTGGGAAATGATTAAAATGGATCCTGACCTCAGTC
TAACACACAAGATTCTTCCAGATGATCCCGATAAAAAACCACAAGCAAAACAGTTGCAGACCCGTGCAGA
CTACCTCATCAAATTACTTAGTAGAGATCTTGCAAAAAAAGAAGCTCTTTCTGGTGCGGGAAGTTCAAAG
AGGAGAAAAGCAAGAGCTAAGAAGAATAAAGCAATGAAGTCTATAAAAGTGAAAGAGGAAATAAAGAGTG
ATTCTTCTCCTCTGCCTTCAGAGAAGTCTGATGAAGATGATGATAAATTGAGTGAATCCAAGTCTGATGG
TAGGGAAAGATCCAAGAAATCTTCAGTGTCAGATGCTCCAGTTCATATCACGGCAAGTGGTGAACCAGTT
CCCATTTCTGAAGAATCTGAAGAGCTGGATCAGAAGACATTCAGCATTTGTAAAGAAAGAATGAGGCCTG
TTAAAGCAGCTTTGAAACAACTTGATAGGCCTGAGAAAGGCCTTTCAGAAAGAGAACAACTAGAGCATAC
TAGACAATGTTTAATAAAAATTGGAGACCATATCACAGAATGTCTAAAAGAGTATACAAATCCTGAACAA
ATTAAGCAATGGAGAAAAAACCTGTGGATTTTTGTATCTAAGTTTACTGAATTTGATGCAAGAAAATTAC
ATAAATTATATAAGCATGCTATTAAAAAACGGCAGGAGTCTCAGCAAAACAGTGATCAAAACAGCAACTT
GAATCCTCACGTGATTAGAAATCCAGATGTGGAAAGATTAAAAGAGAATACAAATCACGATGATAGCAGC
AGGGACAGTTATTCCTCTGATAGACACTTAACTCAGTACCATGATCATCATAAAGACCGACATCAGGGAG
ATTCTTACAAAAAAAGTGATTCCAGGAAAAGACCCTATTCTTCTTTTAGTAATGGTAAAGACCATCGTGA
TTGGGATCACTACAAGCAAGACAGCAGATATTACAGTGACAGAGAGAAACACAGAAAACTGGATGATCAC
AGGAGTAGAGATCACAGGTCAAATTTGGAAGGAAGTTTAAAAGATAGATCTCATTCTGATCATCGTTCTC
ACTCAGATCATCGGTTACATTCAGACCACCGGTCAAGTTCTGAATATACGCACCATAAATCTTCCAGGGA
TTATAGGTATCACTCAGACTGGCAAATGGACCACAGAGCTTCCAGCAGTGGCCCTAGGTCACCACTAGAT
CAGAGATCTCCTTATGGCTCCAGATCTCCATTTGAACATTCAGTTGAACACAAAAGTACACCGGAGCATA
CCTGGAGTAGTCGGAAAACATAA

Translation (1710 aa):
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSR
ENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVK
RKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKK
RQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDC
RIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLD
NYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
CSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLN
WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV
YLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTL
IDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKK
DVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDN
NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIY
RLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEP
EGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPED
QRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPR
ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERT
GGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSN
LLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSK
RRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGRERSKKSSVSDAPVHITASGEPV
PISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQ
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNSDQNSNLNPHVIRNPDVERLKENTNHDDSS
RDSYSSDRHLTQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDH
RSRDHRSNLEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSPLD
QRSPYGSRSPFEHSVEHKSTPEHTWSSRKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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