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Report for CCDS16967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16967.1 Public Mus musculus 2 Aar2 23 108 98 CCDS HistoryNCBI Gene:68295Re-query CCDS DB by CCDS ID:16967.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029158.3 ENSMUSP00000029158.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029158.3Link to Ensembl Protein Viewer:ENSMUSP00000029158.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029158Re-query CCDS DB by Protein ID:ENSMUSP00000029158
Original member Current member EBI ENSMUST00000109570.7 ENSMUSP00000105198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109570.7Link to Ensembl Protein Viewer:ENSMUSP00000105198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109570Re-query CCDS DB by Protein ID:ENSMUSP00000105198
Original member Current member NCBI NM_001164818.1 NP_001158290.1 Accepted alive Link to Nucleotide Sequence:NM_001164818.1Link to Protein Sequence:NP_001158290.1Re-query CCDS DB by Nucleotide ID:NM_001164818Re-query CCDS DB by Protein ID:NP_001158290Link to BLAST:NP_001158290.1
Original member Current member NCBI NM_026661.4 NP_080937.3 Accepted alive Link to Nucleotide Sequence:NM_026661.4Link to Protein Sequence:NP_080937.3Re-query CCDS DB by Nucleotide ID:NM_026661Re-query CCDS DB by Protein ID:NP_080937Link to BLAST:NP_080937.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158290.1 384 Q9D2V5 384 100% 0 0
NP_080937.3 384 Q9D2V5 384 100% 0 0

Chromosomal Locations for CCDS 16967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156550693 156551449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156555827 156556056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156566865 156567032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGTCTTCCATGCAGATGGATCCAGAGTTAGCCAAGCAGCTCTTCTTTGAAGGAGCCACGGTGGTCATTC
TGAACATGCCCAAGGGGACAGAGTTTGGCATTGACTACAACTCTTGGGAGGTGGGGCCCAAGTTCCGGGG
TGTGAAGATGATTCCCCCTGGCATCCACTTCCTGTACTACAGCTCTGTGGACAAGGCCAATCCCAGGGAG
GTGGGCCCTCGCATGGGCTTCTTCCTCAGCCTGAAGCAGCGGGGGCTGACAGTCCTGCGCTGGAATGCAG
TCCAGGAAGAAGTAGACCTGTCTCCAGCTCCAGAGGCTGAAGTAGAAGCTATGAGAGCCAATCTCCCAGA
CCTAGACCAGTTTCTGGGACCTTACCCATATGCTACACTCAAGAAATGGATCTCACTCACCAACTTCATC
AGTGAGGCCACCATGGAGAAGCTGCAGCCTGAGAGCAGGCAGATCTGCGCCTTCTCAGATGTGCTGCCTG
TGCTTTTCATGAAGCACACCAAGGACAGGGTGGGGCAGAACCTGCCCCTCTGCGGCACCGAGTGCAGAAG
CTACCAAGAGGGCCTAGCCCGGCTGCCCGAGATGAGGCCCAGGGCTGGGACAGAGATCCGCTTCTCAGAG
TTGCCCACTCAGATGTTCCCAGCAGGAGCCACACCAGCAGAGATCACCAGGCACAGCATGGACTTGAGCT
ATGCCCTCGAAACTGTGCTCAGCAAGCAGTTCCCTGGCAACCCCCAGGATGTGCTTGGTGAGCTCCAGTT
TGCCTTTGTGTGCTTCTTGCTGGGCAATGTGTATGAGGCATTTGAGCACTGGAAGCGGCTCCTGAACCTC
CTGTGTCGGTCTGAATCTGCCATGGGGAAGTACCACGCCCTGTACATCAGCCTCATCTCCATCCTGTACC
ACCAGCTTGGTGAGATCCCTGCTGACTTCTTTGTGGACATTGTCTCCCAGGACAACTTCCTCACCAGTAC
CTTACAGGTTTTCTTTTCTTCTGCCTGCAGTATTGCTGTGGAAGCCACCCTGAGGAAGAAAGCTGAGAAG
TTCCAAGCCCACCTGACTAAGAAGTTCCGCTGGGACTTCACTTCAGAGCCAGAGGACTGTGCCCCAGTGG
TGGTGGAGCTCCCCGAGGGCATCGAGACGGCCTAA

Translation (384 aa):
MSSMQMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDKANPRE
VGPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLPDLDQFLGPYPYATLKKWISLTNFI
SEATMEKLQPESRQICAFSDVLPVLFMKHTKDRVGQNLPLCGTECRSYQEGLARLPEMRPRAGTEIRFSE
LPTQMFPAGATPAEITRHSMDLSYALETVLSKQFPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNL
LCRSESAMGKYHALYISLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVEATLRKKAEK
FQAHLTKKFRWDFTSEPEDCAPVVVELPEGIETA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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