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Report for CCDS26573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26573.1 Public Mus musculus 13 Ntrk2 23 108 98 CCDS HistoryNCBI Gene:18212Re-query CCDS DB by CCDS ID:26573.1Re-query CCDS DB by GeneID:18212See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079828.6 ENSMUSP00000078757.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079828.6Link to Ensembl Protein Viewer:ENSMUSP00000078757.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079828Re-query CCDS DB by Protein ID:ENSMUSP00000078757
Original member Current member EBI ENSMUST00000225488.1 ENSMUSP00000153553.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225488.1Link to Ensembl Protein Viewer:ENSMUSP00000153553.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225488Re-query CCDS DB by Protein ID:ENSMUSP00000153553
Original member NCBI NM_001025074.2 NP_001020245.1 Updated not alive Link to Nucleotide Sequence:NM_001025074.2Link to Protein Sequence:NP_001020245.1Re-query CCDS DB by Nucleotide ID:NM_001025074Re-query CCDS DB by Protein ID:NP_001020245
Current member NCBI NM_001025074.3 NP_001020245.1 Accepted alive Link to Nucleotide Sequence:NM_001025074.3Link to Protein Sequence:NP_001020245.1Re-query CCDS DB by Nucleotide ID:NM_001025074Re-query CCDS DB by Protein ID:NP_001020245Link to BLAST:NP_001020245.1
Original member NCBI NM_001282961.1 NP_001269890.1 Updated not alive Link to Nucleotide Sequence:NM_001282961.1Link to Protein Sequence:NP_001269890.1Re-query CCDS DB by Nucleotide ID:NM_001282961Re-query CCDS DB by Protein ID:NP_001269890
Current member NCBI NM_001282961.2 NP_001269890.1 Accepted alive Link to Nucleotide Sequence:NM_001282961.2Link to Protein Sequence:NP_001269890.1Re-query CCDS DB by Nucleotide ID:NM_001282961Re-query CCDS DB by Protein ID:NP_001269890Link to BLAST:NP_001269890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020245.1 821 P15209-1 821 100% 0 0
NP_001269890.1 821 P15209-1 821 100% 0 0

Chromosomal Locations for CCDS 26573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58808729 58808940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58837796 58837870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58837985 58838056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58842876 58842944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58846700 58846854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58859169 58859305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58860146 58860278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58861250 58861555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58871736 58871771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58874328 58874425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58878163 58878262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58985802 58985990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59037967 59038097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59054293 59054465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59060228 59060462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59126433 59126591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59128168 59128353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGTCGCCCTGGCTGAAGTGGCATGGACCCGCCATGGCGCGGCTCTGGGGCTTATGCCTGCTGGTCTTGG
GCTTCTGGAGGGCCTCTCTCGCCTGCCCGACGTCCTGCAAATGCAGTTCCGCTAGGATTTGGTGTACTGA
GCCTTCTCCAGGCATCGTGGCATTCCCGAGGTTGGAACCTAACAGCGTTGACCCGGAGAACATCACGGAA
ATTCTCATTGCAAACCAGAAAAGGCTAGAAATCATCAATGAAGATGACGTTGAAGCTTACGTGGGGCTGA
GAAACCTTACAATTGTGGATTCCGGCTTAAAGTTTGTGGCTTACAAAGCGTTTCTGAAAAACAGCAACCT
GCGGCACATAAATTTCACACGAAACAAGCTGACGAGTTTGTCCAGGAGACATTTCCGCCACCTTGACTTG
TCTGACCTGATCCTGACGGGTAATCCGTTCACGTGCTCCTGCGACATCATGTGGCTCAAGACTCTCCAGG
AGACTAAATCCAGCCCCGACACTCAGGATTTGTACTGCCTCAATGAGAGCAGCAAGAACATGCCCCTGGC
GAACCTGCAGATACCCAATTGTGGTCTGCCATCTGCACGTCTGGCTGCTCCTAACCTCACCGTGGAGGAA
GGAAAGTCTGTGACCCTTTCCTGCAGTGTGGGGGGTGACCCACTCCCCACCTTGTACTGGGACGTTGGGA
ATTTGGTTTCCAAGCACATGAATGAAACAAGCCACACACAGGGCTCCTTAAGGATAACGAACATTTCATC
TGATGACAGTGGAAAGCAAATCTCTTGTGTGGCAGAAAACCTTGTAGGAGAAGATCAAGATTCTGTGAAC
CTCACTGTGCATTTTGCGCCAACTATCACGTTTCTCGAGTCTCCAACCTCAGATCACCACTGGTGCATTC
CATTCACTGTGAGAGGCAACCCCAAGCCTGCGCTTCAGTGGTTCTACAATGGGGCCATACTGAATGAGTC
CAAGTACATCTGTACTAAGATCCACGTCACCAATCACACGGAGTACCATGGCTGCCTCCAGCTGGATAAC
CCCACTCATATGAATAACGGAGACTACACCCTGATGGCCAAGAACGAGTATGGGAAGGATGAGAGACAGA
TCTCCGCTCACTTCATGGGCCGGCCTGGAGTCGACTACGAGACAAACCCAAATTACCCTGAAGTCCTCTA
TGAAGACTGGACCACGCCAACTGACATTGGGGATACTACGAACAAAAGTAATGAAATCCCCTCCACGGAT
GTTGCTGACCAAAGCAATCGGGAGCATCTCTCGGTCTATGCCGTGGTGGTGATTGCATCTGTGGTGGGAT
TCTGCCTGCTGGTGATGTTGCTCCTGCTCAAGTTGGCGAGACATTCCAAGTTTGGCATGAAAGGCCCAGC
TTCGGTCATCAGCAACGACGATGACTCTGCCAGCCCCCTCCACCACATCTCCAATGGGAGTAACACTCCA
TCTTCTTCGGAGGGCGGTCCCGACGCTGTCATTATTGGAATGACCAAGATTCCTGTTATTGAAAACCCCC
AGTACTTTGGCATCACCAACAGTCAGCTCAAGCCAGACACATTTGTTCAGCATATCAAGAGACACAACAT
CGTTCTGAAGAGGGAACTTGGGGAAGGAGCCTTCGGGAAAGTTTTCCTTGCCGAGTGCTACAACCTCTGC
CCAGAGCAGGATAAGATCCTGGTGGCTGTGAAGACGCTGAAGGACGCCAGCGACAATGCACGCAAGGACT
TTCATCGGGAAGCTGAGCTGCTGACCAACCTCCAGCACGAGCACATTGTCAAGTTCTACGGTGTCTGTGT
GGAGGGCGACCCACTCATCATGGTCTTTGAGTACATGAAGCACGGGGACCTCAACAAGTTCCTTAGGGCA
CACGGGCCCGACGCAGTGCTGATGGCAGAGGGTAACCCGCCCACAGAGCTGACGCAGTCGCAGATGCTGC
ACATCGCTCAGCAAATCGCAGCAGGTATGGTCTACCTGGCGTCCCAACACTTTGTGCACCGTGACCTGGC
CACCCGGAACTGCCTGGTGGGAGAGAACCTGCTGGTGAAAATTGGGGACTTTGGGATGTCCCGAGATGTG
TACAGCACCGACTACTATCGGGTCGGTGGCCACACAATGTTGCCCATCCGATGGATGCCTCCAGAGAGCA
TCATGTACAGGAAATTCACCACCGAGAGCGACGTCTGGAGCCTGGGCGTTGTGTTGTGGGAGATCTTCAC
CTACGGCAAGCAGCCCTGGTATCAGCTATCGAACAATGAGGTGATAGAGTGCATCACCCAGGGAAGAGTC
CTTCAGCGGCCTCGAACGTGTCCCCAGGAGGTGTATGAGCTCATGCTTGGATGCTGGCAGCGGGAACCAC
ACACCCGGAAGAACATCAAGAGCATCCACACCCTCCTTCAGAACTTGGCCAAGGCATCTCCCGTCTACCT
GGATATCCTAGGCTAG

Translation (821 aa):
MSPWLKWHGPAMARLWGLCLLVLGFWRASLACPTSCKCSSARIWCTEPSPGIVAFPRLEPNSVDPENITE
ILIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAYKAFLKNSNLRHINFTRNKLTSLSRRHFRHLDL
SDLILTGNPFTCSCDIMWLKTLQETKSSPDTQDLYCLNESSKNMPLANLQIPNCGLPSARLAAPNLTVEE
GKSVTLSCSVGGDPLPTLYWDVGNLVSKHMNETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVN
LTVHFAPTITFLESPTSDHHWCIPFTVRGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN
PTHMNNGDYTLMAKNEYGKDERQISAHFMGRPGVDYETNPNYPEVLYEDWTTPTDIGDTTNKSNEIPSTD
VADQSNREHLSVYAVVVIASVVGFCLLVMLLLLKLARHSKFGMKGPASVISNDDDSASPLHHISNGSNTP
SSSEGGPDAVIIGMTKIPVIENPQYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLC
PEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRA
HGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDV
YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV
LQRPRTCPQEVYELMLGCWQREPHTRKNIKSIHTLLQNLAKASPVYLDILG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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