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Report for CCDS14853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14853.1 Public Mus musculus 1 Fam135a 23 108 98 CCDS HistoryNCBI Gene:68187Re-query CCDS DB by CCDS ID:14853.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027337.14 ENSMUSP00000027337.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027337.14Link to Ensembl Protein Viewer:ENSMUSP00000027337.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027337Re-query CCDS DB by Protein ID:ENSMUSP00000027337
Original member Current member NCBI NM_026604.4 NP_080880.4 Accepted alive Link to Nucleotide Sequence:NM_026604.4Link to Protein Sequence:NP_080880.4Re-query CCDS DB by Nucleotide ID:NM_026604Re-query CCDS DB by Protein ID:NP_080880Link to BLAST:NP_080880.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080880.4 1506 Q6NS59-1 1506 100% 0 0

Chromosomal Locations for CCDS 14853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24012292 24012497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24014779 24014892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24020675 24020785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24021854 24022005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24024213 24024310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24024782 24024873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24026608 24026768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24028200 24030528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24030742 24030896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24032663 24032736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24044114 24044269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24046358 24046407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24053183 24053336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24054004 24054130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24055744 24055917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24057204 24057274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24057366 24057505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24067899 24067978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24085411 24085487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4521 nt):
ATGACTGAAGTTCAAGCAATGGTAGAATTCTCCGTGGAGCTAAACAAGTTCTACAACGTGGATTTATTCC
AAAGAGGTTTTTACCAAATACGCGCATCGATGAAAATACCAGCAAGAATTCCCCACCGAGTAGAAGCCAG
TTTGTTACACGCAACAGGCATGACATTAGCCTTTCCAGCTTCCGTTCATGATGCTCTGGTTTGCAGCAAA
ACATTTCAGATCCTATATAAAAATGAAGAAGTTGTTTTAAATGATGTCATGATCTTCAAAGTTAAAATGC
TGTTGGATGAAAGAAAGATTGAAGAAACCCTTGAAGAAATCAGTTTTTTGTTATCGTTGGGTCTACATTT
CACAGATGGAGACTATTCGGCAGATGATCTGAATGCCTTGCAACTAATAAGCAGTCGGACATTGAAGCTG
CACTATAGCATCTGTAGAGGCCTTCATCACCATGCGAATGTCATGTTTGATTACTTCCACCTGTCTGTGG
TGTCCGTTACAGTTCACGCGTCATTGGTTGCACTACACCAGCCGCTAATAAGCTTTCCTCGCCCTGTGAA
GACCACTTGGTTAAATAGAAATGCGCCAGCACAGAGCAAAGACTCGGCGATTCCGACTCTGGAAAGTGTA
GTCTTTGGTATTAACTACACAAAACAGTTATCACCAGATGGCTGTAGCTTCCTCATTGCAGAGTCCTTCC
TGCACCATGCCTATCATTTTCATTATACACTTTGTGCTACTTTGCTGCTAGCCTTCAAGGGATTGCACAG
CTACTTCATTACGGTAACAGAAGAGATTCCCTCTTGTCAGAAACTAGACCTGGAGGAAATGGATGTAGAA
GCTCGTCTTACTGAACTGTGTGAAGAAGTTAAGAAAGTAGAAAACCCTGATGAACTGGCAGAACTCATCA
ACATGAACCTTGCACAGCTCTGCTCACTTCTCATGGCTTTATGGGGACAGTTTTTGGAAGCTATAACACT
GCATGAAGATTTAAGAGTGCTGTTAGCACAGGAACACCATACTTTGAGGGTTCGCAGATTTTCGGAGGCG
TTCTTTTGTTTTGAACATCCAAGAGAAGCTGCCATTGCATACCAAGAACTCCATGCTCAGAGTCATCTAC
AGATGTGCACCGCTATCAAAAATACTTCCTTCTGCAGTTCTCTTCCACCCCTACCTATTGAATGTAGTGA
ATTAGATGGAGATCTCAATTCATTACCTATAATCTTTGAAGATAGGTATTTAGATTCAGTTATTGAAGAC
TTAGATGCGCCCTGGATGGGAATTCAAAGTCTTCAGATATCAGAGGCCAGTAAAACGGATAAACATGAGA
CTGAAGAAAGCTCTGTAGTAGGACTTTCTAGCCCAGAGTTGAAGGTCAGACCTGCTGTTGCCTCCAGTAA
TTGCTATACAGAAGGTGAAAAGCAGCTAACAAAATCTCTAAAAGGAAAGAATGAAGAATCAAATAAATCC
AAGGTTAAGGTCACTAAGCTCATGAAAACAATGAAACCAGAAAACACAAAAAAGTTAATAAAACAGAACT
CTAAAGATTCTGTGGTTTTAGTAAGCTACAAATGTTTGAAAACTACAGCCTCAAGTGATTTCACTAAATG
CTTGGAAGGCAGTCCTTCACATAGTCAGAAGGAAGGTCTGGATCCCACACTGTGTGCAGGTAATTTTGAC
CCAAAGACCTACACCAGACAGCCAAGTCAAAAGGAAGCTAGCTCTTTGTCAGCTAACACAGACAGAAGTG
AACATAAGTCTCCAGATACTGAAAATATGCAACCAGACCAGTTCGAGCTCTTGAACTCTGGCAGCCTAAA
TCTTTGTGCAAATTTGTCCATTTCAGGTAAACTTGCTATATCCCAAGACAATAGTGATATTCCAGATACG
GAACACAATCTGGCATCTACAAGTTCATCAAATGATTGCCATGACTATCAGACAACCCCATCTTCGGGAG
TTAGAACACTTGAAGTCAAGTCCAGCAGTAAAGAGTCTTTCAATGGAGAGAAAATTACTGTTAAAATAGG
ACCTTGGACAGAGCTTCAAGAAGCTGAACTATTTGTGGATAATTTACTGCCAGATTTTGAGGCCTTAGAC
TCTAATGATAAACCCAAGTCTATAGATATACCACTTGAAAGGGATGCTTTACAGGAGACAAAATGTCATT
CTACTGAAGAATCATTAACTAAATTCAGAAGTAATCTACCTGCTCCTTCTACAAAAGAATATCATGTTGC
AGTAAGTAGTGACACGATTAAATTACCAGACACTAATGCCACGTATGCCTCCTCTAGATTCTCAGATTCA
GGTGTTGAAAGTGAACCAAGTTCTTTTGCAACACATCCAAATCCGGAGATAGCCTTTGAGACTCTCCAAG
GGCCAGGTCCTTGCAATAATGAAAGGTTATTTCCTCAGCTTTTGATGAAGCCTGATCACAATGTAAAATT
TTCATTAGGAAGTCATTGCACTGAGAGCACAAGTGCTTTAAGTGAAATACAGTCATCTTTGACATCCATA
AACTCCCTGCCTTCAGATGATGAACTGTCACCCGATGACAACTGTAAGAAGTCTGCTGTGCCTGACTGTC
ATCTAAGTGACAGTAAAACTGTATTCAATCTAGGAACAATGGATCTGCCAAAATGCGACGATACTAAAAA
GTCAAGTATTATTTTGCAACAACAAAGTGTTGTTTTTTCAGGACATTTGGACAATGATACGTTAGCAATG
CATTCCTTAGATTTAAGCACTGAGGACCCTTTACGGCTCGTTTTCTTGGATGAAGATGCTTCTAGTGGTG
TGAGAAGTAGCTGGGGCTCCAAACCTCATTTGGATGCTCCCTTTACAGGCCCCCAGAGTCAGGGTACATC
TAGTAACAACTCCACGGAATCAGTGCCAACACTAAATTCAAAACTGATTTGCTTAGGTTCTCCCTGTGTG
GTCTCAGGTTCTGTTTGCACTGATGCAGGGCTCAGTGCAGATAGAACTGTGGAAGGAAAGAGCGGTGAGC
CATTAAATCACAAACAAGTGTGTTCAGCAGCCCCTGTTGTGGAAAGTGACCCTCTTTCCAGCAGTACTGA
TGTGGTAAAACAAGGGCTGGTGGAAAATTATTTTGGATCTCAGAGCACTACAGATGTTTCTGATGCATGT
GCTATTACCTGCCACAGTCCAGTTAGCTCTCAGGAAACCTGCGACAAAGGGATTAGTGATCTGCAGCAGG
AACAGGGCAAAGAGGAGGAAGAGGAGGATCAAGAAATGGTTCAAAATGGGTATCATGAAGAAACAGATTT
TTCAGCTACGGATGGAACAGTAAGTGTTCACTATATAAGTGGAAACGAGTTAGGAGAAGGAAGACATGAA
CAGTCTGAAAAACTAAGCAGCAACTATCTGAGTGCTGGTGTGACTGTTCCTGCTGTTTGTACATCTGGTT
GTTTGTCCTTCCCATCTGCTCTGCGAGAGTCTCCTTGTGTTAAATATTCTTCTAGAAGTAAAGTTGATGC
CATTACAAAGCAACCAAGCAGCATTTCTTACAACTTCAGTTCTTCAACCTCCTGGTATGAAAATTCACCA
AAACCTCAAATACACGCCTTCCTTCAGGCAAAAGAAGAGCTGAAGCAACTCAGACTGCCTGGTTTCATGT
ACAGTGATGTTCCTCTGCTGGCATCCTCAGCACCGTACTTCAGCATGGACGAAGAGGACGGCTCTGAGGA
CGGCGTGCATCTCATTGTCTGTGTCCATGGTCTAGATGGAAACAGTGCAGATCTCCGACTAGTAAAAACA
TACATTGAACTTGGACTGCCTGGGGGAAGAGTTGATTTTCTTATGTCTGAGAGAAACCAGAATGATACTT
TTGCTGATTTTGACTGCATGACTGATCGCCTTTTGGATGAGATCATACAGTATATTCAGATATATAGTTT
AACAGTCTCAAAAATAAGCTTTATTGGACATTCGTTAGGCAATTTAATAATCCGTTCAGTGCTTACAAGG
CCAAGGTTTAAATATTACCTCAGCAAACTTCATACCTTTCTCTCTCTTTCTGGACCTCATCTTGGTACAC
TCTACAACAGCAGTGCTCTCGTCAATACAGGTCTCTGGTTTATGCAGAAATGGAAAAAATCAGGCTCTCT
TTTACAGTTGACATGTCGAGATCATTCAGACCCTCGCCAAACATTTTTATATAAGCTTAGTAATAAAGCG
GGACTTCATTATTTCAAGAATGTTGTGCTGGTTGGATCCCTGCAGGATCGCTATGTTCCTTACCATTCTG
CCCGCATTGAAATGTGTAAAACAGCTTTAAAGGACAAGCAGTCAGGACAAATCTATTCCGAAATGATCCA
CAACTTGCTTCGCCCAGTTCTGCAAAGCAAAGGCTGTAATTTGGTTCGGTACAATGTCATTAATGCGTTG
CCCAACACGGCTGATTCGCTCATCGGAAGAGCTGCACACATAGCTGTTCTTGATTCTGAGATATTTTTAG
AGAAGTTTTTCCTGGTTGCCGCCCTCAAATATTTTCAGTAG

Translation (1506 aa):
MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPARIPHRVEASLLHATGMTLAFPASVHDALVCSK
TFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEISFLLSLGLHFTDGDYSADDLNALQLISSRTLKL
HYSICRGLHHHANVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQSKDSAIPTLESV
VFGINYTKQLSPDGCSFLIAESFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLEEMDVE
ARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEDLRVLLAQEHHTLRVRRFSEA
FFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIED
LDAPWMGIQSLQISEASKTDKHETEESSVVGLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKS
KVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKTTASSDFTKCLEGSPSHSQKEGLDPTLCAGNFD
PKTYTRQPSQKEASSLSANTDRSEHKSPDTENMQPDQFELLNSGSLNLCANLSISGKLAISQDNSDIPDT
EHNLASTSSSNDCHDYQTTPSSGVRTLEVKSSSKESFNGEKITVKIGPWTELQEAELFVDNLLPDFEALD
SNDKPKSIDIPLERDALQETKCHSTEESLTKFRSNLPAPSTKEYHVAVSSDTIKLPDTNATYASSRFSDS
GVESEPSSFATHPNPEIAFETLQGPGPCNNERLFPQLLMKPDHNVKFSLGSHCTESTSALSEIQSSLTSI
NSLPSDDELSPDDNCKKSAVPDCHLSDSKTVFNLGTMDLPKCDDTKKSSIILQQQSVVFSGHLDNDTLAM
HSLDLSTEDPLRLVFLDEDASSGVRSSWGSKPHLDAPFTGPQSQGTSSNNSTESVPTLNSKLICLGSPCV
VSGSVCTDAGLSADRTVEGKSGEPLNHKQVCSAAPVVESDPLSSSTDVVKQGLVENYFGSQSTTDVSDAC
AITCHSPVSSQETCDKGISDLQQEQGKEEEEEDQEMVQNGYHEETDFSATDGTVSVHYISGNELGEGRHE
QSEKLSSNYLSAGVTVPAVCTSGCLSFPSALRESPCVKYSSRSKVDAITKQPSSISYNFSSSTSWYENSP
KPQIHAFLQAKEELKQLRLPGFMYSDVPLLASSAPYFSMDEEDGSEDGVHLIVCVHGLDGNSADLRLVKT
YIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTR
PRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKA
GLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINAL
PNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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