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Report for CCDS36635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36635.1 Public Mus musculus 13 Snrnp48 23 108 98 CCDS HistoryNCBI Gene:67797Re-query CCDS DB by CCDS ID:36635.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091641.12 ENSMUSP00000089230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091641.12Link to Ensembl Protein Viewer:ENSMUSP00000089230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091641Re-query CCDS DB by Protein ID:ENSMUSP00000089230
Original member Current member NCBI NM_026382.2 NP_080658.2 Accepted alive Link to Nucleotide Sequence:NM_026382.2Link to Protein Sequence:NP_080658.2Re-query CCDS DB by Nucleotide ID:NM_026382Re-query CCDS DB by Protein ID:NP_080658Link to BLAST:NP_080658.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080658.2 337 Q9D361-1 337 100% 0 0

Chromosomal Locations for CCDS 36635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38204973 38205128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38209877 38209990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38210207 38210267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38211067 38211141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38216325 38216513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38217374 38217495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38220688 38220776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38221235 38221393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38226874 38226922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAGACCGAACCTCCTCCTCTGGAAGAGCGGCGTCGGCTCCAGGAGGAGCTGAGCGAGTTTGTGGAGA
GCTGCTGCCGGACGCTGGAGGAGGTGACGGCGTCCCTGGGATGGAGCCTGGATCAGCTGGACCCCGGGGA
CGAGGCGGAGGCCGAGGATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCA
CTAACAAAGCACATGGAATCTTGCAGATTGAGGAAACTGGGATATACCAAAGAGGAAGAGAATGAAATGT
ACAATCCTACTTTTTTCTATGAAAATTTGAAGATTCCTTCAGTTACTTTGAATAAGGATTCACAGTTCCA
GATAATTAAACAAGCTAGGACTACAGCTGGGAAAGATGGTGATTGTTATAGCCAGAGAATGTATTCTTCA
GTGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAACGGATCGCCTTGCCC
TGTATGATTTTGTCATTGAGGAGACAAAGAAAAAGCGCTCTGGTCCTCAAGTCATTGAAAATGACAGTGA
CCTGTTTGTAGACTTGGCTGCTAAAGTCAATCAAGATAATAGCCGAAAAAGTCCAAAATCTTACCTGGAA
ATCCTGGCAGAAGTGAGAGATTATAAAAGAAGACGCCAGTCCTACAGAGCTAAGAATGTTCACATAACCA
AGAAATCATACACTGAGGTGATCCGGGATGTGATCAAGGTGCACATGGAGGAGCTGAGCAGCCACTGGCA
GGAAGAGCAGGGGAGAGCAGGAGACGCTGCTGAGAAGAATGAAGAAAGGCGGTCAGCTTCAGTAGATTCA
CGGCAGTCTGGTGGAAGTTATTTGGATGTTGAAAGTTCACGACATAGAAGGGCTCGGAGTAGGAGCCCAC
ACAAACGAAAAAGAAATAAAGATAAAAGTTCTGAGTCAAGAAGAAGAAAAGAGAGGGATGGAGAAAGACA
TCATAGTCATAAAAGAAGAAAGCAAAAAATATAA

Translation (337 aa):
METEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDQLDPGDEAEAEDEIAICPYDSNHRMPKSS
LTKHMESCRLRKLGYTKEEENEMYNPTFFYENLKIPSVTLNKDSQFQIIKQARTTAGKDGDCYSQRMYSS
VPVEVPLNHKRSVCDLTQTDRLALYDFVIEETKKKRSGPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLE
ILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSSHWQEEQGRAGDAAEKNEERRSASVDS
RQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSESRRRKERDGERHHSHKRRKQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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