NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20505.1 Public Mus musculus 6 Necap1 23 108 98 CCDS HistoryNCBI Gene:67602Re-query CCDS DB by CCDS ID:20505.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032477.5 ENSMUSP00000032477.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032477.5Link to Ensembl Protein Viewer:ENSMUSP00000032477.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032477Re-query CCDS DB by Protein ID:ENSMUSP00000032477
Original member Current member NCBI NM_026267.3 NP_080543.2 Accepted alive Link to Nucleotide Sequence:NM_026267.3Link to Protein Sequence:NP_080543.2Re-query CCDS DB by Nucleotide ID:NM_026267Re-query CCDS DB by Protein ID:NP_080543Link to BLAST:NP_080543.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080543.2 275 Q9CR95 275 100% 0 0

Chromosomal Locations for CCDS 20505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122874569 122874663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122880413 122880513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122880658 122880762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122881501 122881582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122882268 122882376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122882814 122882997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122886752 122886854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122887340 122887388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGCGGCAGAGCTGGAATATGAGTCCGTGCTGTGTGTGAAGCCCGACGTCAGCGTCTACCGGATTCCGC
CGCGGGCCTCCAACCGCGGTTACAGGGCATCTGACTGGAAGCTAGACCAACCTGATTGGACTGGTCGCCT
GCGAATCACTTCAAAAGGGAAGATTGCCTACATCAAACTGGAAGACAAAGTTTCAGGGGAGCTCTTTGCT
CAGGCCCCCGTAGAACAGTATCCTGGGATTGCTGTGGAGACTGTGACAGACTCCAGCCGCTACTTTGTGA
TCAGGATCCAGGATGGAACCGGGCGCAGCGCGTTTATTGGCATCGGCTTCACGGATCGGGGAGATGCCTT
CGACTTTAATGTTTCCCTGCAAGATCACTTCAAGTGGGTAAAGCAGGAAACTGAGATTTCCAAAGAATCA
CAGGAAATGGATAATCGTCCCAAGTTGGATTTAGGCTTCAAGGAAGGACAGACCATCAAATTGAGTATTG
GGAATATTACAGCCAAGAAAGGAGGTGCTTCTAAGCCCCGGGCCTCAGGGACGGGGGGCCTGAGCTTACT
GCCACCGCCACCTGGAGGCAAAGTCACTATTCCCCCACCATCCTCCTCAGTTGCCATCAGCAACCATGTC
ACCCCACCACCTATTCCAAAATCTAACCATGGAGGTAATGATTCAGATATCCTGTTAGATTTGGATTCTC
CGGCTCCTGTCTCAACTTCAGCACCAGCTCCAGTTTCTACAAGCAATGACTTGTGGGGAGACTTCAGCAC
TGCATCCAGCTCTGTTCCTAACCAGGCACCACAGCCATCTAACTGGGTCCAGTTTTGA

Translation (275 aa):
MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFA
QAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKES
QEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASGTGGLSLLPPPPGGKVTIPPPSSSVAISNHV
TPPPIPKSNHGGNDSDILLDLDSPAPVSTSAPAPVSTSNDLWGDFSTASSSVPNQAPQPSNWVQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH