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Report for CCDS19055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19055.1 Public Mus musculus 4 Tnfrsf4 23 108 98 CCDS HistoryNCBI Gene:22163Re-query CCDS DB by CCDS ID:19055.1Re-query CCDS DB by GeneID:22163See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030952.5 ENSMUSP00000030952.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030952.5Link to Ensembl Protein Viewer:ENSMUSP00000030952.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030952Re-query CCDS DB by Protein ID:ENSMUSP00000030952
Original member Current member NCBI NM_011659.2 NP_035789.1 Accepted alive Link to Nucleotide Sequence:NM_011659.2Link to Protein Sequence:NP_035789.1Re-query CCDS DB by Nucleotide ID:NM_011659Re-query CCDS DB by Protein ID:NP_035789Link to BLAST:NP_035789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035789.1 272 P47741 272 99.6324% 0 1

Chromosomal Locations for CCDS 19055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156013874 156014006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156014228 156014350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156014902 156015009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156015386 156015452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156015878 156016074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156016154 156016273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156016362 156016432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGTATGTGTGGGTTCAGCAGCCCACAGCCCTTCTGCTGCTGGGACTCACACTTGGAGTTACAGCAAGGC
GGCTCAACTGTGTTAAACATACCTACCCCAGTGGTCACAAGTGCTGTCGTGAGTGCCAGCCAGGCCATGG
TATGGTGAGCCGCTGTGATCATACCAGGGATACTCTATGTCATCCGTGTGAGACTGGCTTCTACAATGAA
GCTGTCAATTATGATACCTGCAAGCAGTGTACACAGTGCAACCATCGAAGTGGAAGTGAACTCAAGCAGA
ATTGCACACCTACTCAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACCTCGGCAGGACAGCGGCTA
CAAGCTTGGAGTTGACTGTGTTCCCTGCCCTCCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAG
CCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGTCT
GTGAGGACAGAAGCCTCCTGGCCACACTGCTCTGGGAGACCCAGCGCCCTACATTCAGGCCAACCACTGT
CCAATCCACCACAGTCTGGCCCAGGACTTCTGAGTTGCCCTCTCCACCCACCTTGGTGACTCCTGAGGGC
CCTGCATTTGCTGTTCTCCTAGGCCTGGGCCTGGGCCTGCTGGCTCCCTTGACTGTCCTGCTGGCCTTGT
ACCTGCTCCGGAAGGCTTGGAGATTGCCTAACACTCCCAAACCTTGTTGGGGAAACAGCTTCAGGACCCC
GATCCAGGAGGAACACACAGACGCACACTTTACTCTGGCCAAGATCTGA

Translation (272 aa):
MYVWVQQPTALLLLGLTLGVTARRLNCVKHTYPSGHKCCRECQPGHGMVSRCDHTRDTLCHPCETGFYNE
AVNYDTCKQCTQCNHRSGSELKQNCTPTQDTVCRCRPGTQPRQDSGYKLGVDCVPCPPGHFSPGNNQACK
PWTNCTLSGKQTRHPASDSLDAVCEDRSLLATLLWETQRPTFRPTTVQSTTVWPRTSELPSPPTLVTPEG
PAFAVLLGLGLGLLAPLTVLLALYLLRKAWRLPNTPKPCWGNSFRTPIQEEHTDAHFTLAKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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