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Report for CCDS24182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24182.1 Public Mus musculus 10 Ptprr 23 108 98 CCDS HistoryNCBI Gene:19279Re-query CCDS DB by CCDS ID:24182.1Re-query CCDS DB by GeneID:19279See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063470.10 ENSMUSP00000064392.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063470.10Link to Ensembl Protein Viewer:ENSMUSP00000064392.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063470Re-query CCDS DB by Protein ID:ENSMUSP00000064392
Original member NCBI NM_011217.2 NP_035347.1 Updated not alive Link to Nucleotide Sequence:NM_011217.2Link to Protein Sequence:NP_035347.1Re-query CCDS DB by Nucleotide ID:NM_011217Re-query CCDS DB by Protein ID:NP_035347
Current member NCBI NM_011217.3 NP_035347.1 Accepted alive Link to Nucleotide Sequence:NM_011217.3Link to Protein Sequence:NP_035347.1Re-query CCDS DB by Nucleotide ID:NM_011217Re-query CCDS DB by Protein ID:NP_035347Link to BLAST:NP_035347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035347.1 656 Q62132-1 656 100% 0 0

Chromosomal Locations for CCDS 24182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116018755 116018812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116048098 116048393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116160459 116160572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116162455 116162610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116177718 116177828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116188200 116188468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116226159 116226345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116229483 116229567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116236679 116236758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116237231 116237368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116251112 116251222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116252819 116252976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116256130 116256243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116273733 116273826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGAGGAGAGCGGTCGGCTTCCCTGCGCTGTGCCTGCTTCTTAATCTTCATGCTGCAGGTTGTTTTTCCA
GAAACAATGATCACTTTTTGGCTATTCGTCAAAAGAAGAGTTGGAAGCCGGTGTTCATTTATGACCATTC
ACAGGATATCAAGAAGAGCCTGGACATCGCACAAGAGGCATACAAACATAACTACCACTCCCCTTCCGAA
GTTCAAATAAGCAAACATCACCAGATTATTAATTCAGCATTTCCTAGACCTGCATATGACCCGTCTCTTA
ATCTGTTGGCTGAGTCTGATCAAGATCTTGAAATAGAAAATCTCCCAATTCCAGCAGCAAATGTGATTGT
GGTGACACTGCAAATGGATATAACCAAGCTGAACATAACCCTGCTTCGGATCTTCCGCCAAGGAGTAGCT
GCAGCCCTGGGACTCTTACCTCAGCAAGTGCACATTAACCGGCTCATTGAAAAGAAGAACCAGGTTGAGT
TGTTTGTGTCTCCCGGAAACCGGAAACCAGGAGAAACGCAGGCCCTGCAGGCTGAGGAAGTGCTGCGTTC
CCTCAATGTGGATGGTTTGCATCAGAGTTTACCACAGTTTGGAATTACAGACGTCGCCCCTGAGAAAAAT
GTTTTACAAGGGCAGCACGAAGCAGACAAGATCTGGAGCAAAGAAGGATTTTACGCTGTCGTCATCTTCC
TCAGCATCTTTATCATCATAGTAACCTGTTTGATGATTATTTACAGGTTAAAAGAAAGGCTTCAGCTTTC
CTTAAGACAAGATAAAGAGAAAAACCAGGAGATCCACCTATCACCCATTGCACGGCAGCAAGCACAATCG
GAGGCCAAGACGACCCACAGCATGGTCCAGCCCGATCAGGCGCCAAAGGTGCTGAACGTGGTTGTGGACC
CTCAAGGCCAATGCACTCCTGAGATTCGAAACAGCACCTCCACCTCTGTCTGCCCTTCTCCCTTCAGAAT
GAAGCCCATAGGACTCCAGGAGCGACGAGGTTCCAATGTATCTCTTACGCTGGACATGAGTAGCCTGGGC
AGTGTGGAACCCTTTGTGGCCGTCTCAACCCCCCGGGAGAAGGTAGCCATGGAATACCTGCAGTCAGCCA
GCCGAGTTCTCACACGGTCACAGCTGAGGGACGTCGTGGCAAGTTCCCACCTACTTCAAAGTGAATTCAT
GGAAATACCAATGAATTTTGTGGATCCCAAAGAAATTGATATTCCACGTCACGGAACTAAAAATCGTTAT
AAGACCATTTTGCCAAATCCCCTCAGCAGAGTGTGCTTAAGACCAAAAAATATAACCGATTCCTTGAGTA
CTTACATAAATGCTAACTATATTCGGGGCTACAGTGGTAAGGAGAAAGCCTTCATTGCCACCCAGGGCCC
CATGATCAACACTGTGAATGACTTCTGGCAGATGGTGTGGCAAGAAGACAGTCCCGTGATTGTGATGATC
ACGAAACTCAAAGAGAAAAATGAGAAATGTGTGCTCTACTGGCCAGAAAAGAGAGGGATTTACGGCAAGG
TTGAGGTTCTGGTCACCGGTGTGACCGAATGTGATAACTACACCATCCGCAACCTCGTCTTAAAGCAAGG
AAGTCACACCCAACATGTGAAGCACTACTGGTACACTTCATGGCCGGATCATAAGACTCCAGACAGTGCC
CAGCCCCTTCTGCAGCTCATGTTGGATGTGGAAGAAGACAGACTGGCCTCTGAAGGCCGAGGGCCTGTGG
TTGTCCACTGCAGTGCGGGGATTGGGAGAACTGGGTGTTTCATCGCTACATCCATTGGCTGTCAACAATT
GAAAGAAGAAGGAGTTGTAGACGCACTAAGTATTGTCTGCCAGCTTCGTGTAGACAGGGGTGGTATGGTC
CAAACCAGCGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTTCGAGAGCAGACTTTCACCAGAAA
CTGTCGAGTGA

Translation (656 aa):
MRRAVGFPALCLLLNLHAAGCFSRNNDHFLAIRQKKSWKPVFIYDHSQDIKKSLDIAQEAYKHNYHSPSE
VQISKHHQIINSAFPRPAYDPSLNLLAESDQDLEIENLPIPAANVIVVTLQMDITKLNITLLRIFRQGVA
AALGLLPQQVHINRLIEKKNQVELFVSPGNRKPGETQALQAEEVLRSLNVDGLHQSLPQFGITDVAPEKN
VLQGQHEADKIWSKEGFYAVVIFLSIFIIIVTCLMIIYRLKERLQLSLRQDKEKNQEIHLSPIARQQAQS
EAKTTHSMVQPDQAPKVLNVVVDPQGQCTPEIRNSTSTSVCPSPFRMKPIGLQERRGSNVSLTLDMSSLG
SVEPFVAVSTPREKVAMEYLQSASRVLTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRY
KTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMI
TKLKEKNEKCVLYWPEKRGIYGKVEVLVTGVTECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSA
QPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMV
QTSEQYEFVHHALCLFESRLSPETVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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