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Report for CCDS17859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17859.1 Public Mus musculus 3 Slc39a8 23 108 98 CCDS HistoryNCBI Gene:67547Re-query CCDS DB by CCDS ID:17859.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029810.5 ENSMUSP00000029810.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029810.5Link to Ensembl Protein Viewer:ENSMUSP00000029810.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029810Re-query CCDS DB by Protein ID:ENSMUSP00000029810
Original member Current member EBI ENSMUST00000081978.9 ENSMUSP00000080640.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081978.9Link to Ensembl Protein Viewer:ENSMUSP00000080640.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081978Re-query CCDS DB by Protein ID:ENSMUSP00000080640
Original member Current member EBI ENSMUST00000167390.7 ENSMUSP00000128245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167390.7Link to Ensembl Protein Viewer:ENSMUSP00000128245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167390Re-query CCDS DB by Protein ID:ENSMUSP00000128245
Original member Current member EBI ENSMUST00000180196.7 ENSMUSP00000136634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180196.7Link to Ensembl Protein Viewer:ENSMUSP00000136634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180196Re-query CCDS DB by Protein ID:ENSMUSP00000136634
Original member Current member NCBI NM_001135149.1 NP_001128621.1 Accepted alive Link to Nucleotide Sequence:NM_001135149.1Link to Protein Sequence:NP_001128621.1Re-query CCDS DB by Nucleotide ID:NM_001135149Re-query CCDS DB by Protein ID:NP_001128621Link to BLAST:NP_001128621.1
Original member Current member NCBI NM_001135150.1 NP_001128622.1 Accepted alive Link to Nucleotide Sequence:NM_001135150.1Link to Protein Sequence:NP_001128622.1Re-query CCDS DB by Nucleotide ID:NM_001135150Re-query CCDS DB by Protein ID:NP_001128622Link to BLAST:NP_001128622.1
Original member Current member NCBI NM_026228.5 NP_080504.3 Accepted alive Link to Nucleotide Sequence:NM_026228.5Link to Protein Sequence:NP_080504.3Re-query CCDS DB by Nucleotide ID:NM_026228Re-query CCDS DB by Protein ID:NP_080504Link to BLAST:NP_080504.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128621.1 462 Q91W10-1 462 100% 0 0
NP_001128622.1 462 Q91W10-1 462 100% 0 0
NP_080504.3 462 Q91W10-1 462 100% 0 0

Chromosomal Locations for CCDS 17859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135826472 135826690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135849016 135849178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135855904 135856073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135857483 135857605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135858071 135858241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135884197 135884404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135884602 135884786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135886805 135886954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCTCCGGGCCGGGCAGTGGCCGGGCTGCTGCTGCTGGCGGCCACCAGCCTGGGACACCCCTCGGAGG
GACCGGAGCTCGCCTTCAGTGAGGATGTGCTGAGCGTGTTCGGCGCCAACCGGAGCCTGTCGGCCGCGCA
GCTGGGGCGCCTGCTGGAGCGTCTGGGGGCTGCATCCCAGCAGGGAGCGCTGGACCTGGGCCAGCTGCAC
TTCAACCAGTGTTTGTCAGCAGAAGACATCTTTTCTCTTCATGGTTTCTCAAATGTCACCCAGATAACCA
GCTCGAACTTCTCTGCCATCTGCCCCGCGATCTTACAGCAGCTGAACTTCCATCCCTGCGAGGATCTAAG
AAAGCACAACGCAAAGCCCAGTCTTTCCGAAGTCTGGGGCTATGGATTCCTGTCAGTGACAATTATCAAT
CTGGCCTCTCTCCTGGGATTGATTTTAACCCCCTTGATAAAGAAGTCTTATTTCCCCAAGATTTTAACTT
ATTTCGTGGGACTCGCTATTGGGACTCTTTTCTCAAACGCCATTTTCCAGCTTATTCCAGAGGCATTTGG
ATTTAATCCCAAAATTGACAATTACGTTGAGAAAGCAGTTGCTGTGTTTGGTGGATTTTACATGCTTTTC
TTTGTCGAGAGAACACTTAAGATGCTACTGAAAACATATGGCCAGAATGACCATACTCACTTCAGGAATG
ATGACTTTGGTTCTAAAGAAAAAACCCACCAACCCAAAACGTTACCATTGCCTGCAGTCAACGGTGTGAC
TTGCTATGCCAACCCCGCTGTCACTGAGCCTAACGGACACATCCACTTCGACACTGTCAGCGTTGTATCC
CTCCAGGATGGAAAAACAGAGCCAAGCTCATGTACCTGTCTGAAGGGGCCCAAACTGTCAGAAATAGGAA
CAATTGCCTGGATGATCACGCTTTGTGATGCCCTCCACAATTTCATCGACGGCTTGGCGATTGGGGCATC
TTGTACTTTGTCTCTTCTTCAGGGGCTCAGTACGTCCATAGCGATCCTGTGTGAGGAGTTTCCTCATGAG
TTAGGGGACTTTGTGATCTTGCTCAATGCAGGAATGAGCACCCGGCAAGCCTTGCTGTTCAACTTCCTCT
CCGCGTGTTCCTGCTACGTGGGACTAGCTTTCGGCATTTTGGTGGGCAACAATTTTGCTCCCAATATTAT
ATTTGCACTCGCTGGAGGCATGTTCCTCTACATTTCTCTGGCAGATATGTTTCCAGAGATGAACGACATG
CTGAGAGAAAAAGTAACTGGAAGACAAACGGATTTCACCTTCTTCATGATCCAGAATGCAGGGATGTTAA
CCGGCTTCACTGCCATCCTGCTCATCACCTTGTACGCAGGAGACATCGAATTGCAGTAG

Translation (462 aa):
MAPGRAVAGLLLLAATSLGHPSEGPELAFSEDVLSVFGANRSLSAAQLGRLLERLGAASQQGALDLGQLH
FNQCLSAEDIFSLHGFSNVTQITSSNFSAICPAILQQLNFHPCEDLRKHNAKPSLSEVWGYGFLSVTIIN
LASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPEAFGFNPKIDNYVEKAVAVFGGFYMLF
FVERTLKMLLKTYGQNDHTHFRNDDFGSKEKTHQPKTLPLPAVNGVTCYANPAVTEPNGHIHFDTVSVVS
LQDGKTEPSSCTCLKGPKLSEIGTIAWMITLCDALHNFIDGLAIGASCTLSLLQGLSTSIAILCEEFPHE
LGDFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDM
LREKVTGRQTDFTFFMIQNAGMLTGFTAILLITLYAGDIELQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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