NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37453.1 Public Mus musculus 17 Fam120b 23 108 98 CCDS HistoryNCBI Gene:67544Re-query CCDS DB by CCDS ID:37453.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055352.7 ENSMUSP00000054420.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055352.7Link to Ensembl Protein Viewer:ENSMUSP00000054420.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055352Re-query CCDS DB by Protein ID:ENSMUSP00000054420
Original member Current member NCBI NM_001357822.1 NP_001344751.1 Accepted alive Link to Nucleotide Sequence:NM_001357822.1Link to Protein Sequence:NP_001344751.1Re-query CCDS DB by Nucleotide ID:NM_001357822Re-query CCDS DB by Protein ID:NP_001344751Link to BLAST:NP_001344751.1
Original member Current member NCBI NM_024203.3 NP_077165.2 Accepted alive Link to Nucleotide Sequence:NM_024203.3Link to Protein Sequence:NP_077165.2Re-query CCDS DB by Nucleotide ID:NM_024203Re-query CCDS DB by Protein ID:NP_077165Link to BLAST:NP_077165.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344751.1 786 Q6RI63-1 786 100% 0 0
NP_077165.2 786 Q6RI63-1 786 100% 0 0

Chromosomal Locations for CCDS 37453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15401762 15403129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15405755 15405935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15407597 15407698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15414679 15414851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15417633 15417725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15422878 15423084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15424270 15424378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15426189 15426275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15431577 15431617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGGTGTAAGAGGTTTGCAGGGGTTTGTGGGGAGTACGTGCCCACACATATGTACCATAGTCAATATCC
ACGAGCTGGCAGAGCGTCACCGAAACAAGTACCCTGGATGTACGCCTACCATCGTGGTGGACGCCATGTG
CTGTCTCCGATACTGGTACACAGCAGAGTCGTGGGTCTGCGGCGGCCAGTGGAGAGAATACTACTGTGCT
TTGAGAAATTTTGTTGCAGCCTTCACCTCTGCCGGCATCAAGTTGATATTCTTCTTTGATGGCATGGTGG
AGCCGGGGAAGCGAGATGAGTGGGTAAAGCGTAGACTCAAAAACAACCGGGAGATATCCAAGATTTTTCA
CTACATCAAGTCAAAAAGAGACCAGCCAGGCAGAAACATGTTCTTCATTCCCTCTGGGCTGGCCATATTC
ACACGGTTCGCCCTGAAGACACTGGGCCAGGAGACTTTCTGTTCATTACAGGAGGCAGACTACGAGGTGG
CTTCTTATGGCCTCCAGCACAACTGTCTGGGGATCCTTGGGGAAGACACTGACTACTTAATTTATGACAC
TTGCCCCTACTTTTCAATTGGCGATCTCTGCCTAGAGAGTCTCCAAACCATCATGCTCTGTCGAGAGAAG
CTCTGTGAGAGCCTGGGCCTCCGTGTGGCAGACCTTCCTCTTCTGGCCTGTCTGCTTGGCAATGACATCA
CTCCAGAGAGCATGTTTGAAAGCTTTCGGTACAAGTGCTTGTCATCCTATGCTTCTGTGAAAGAGAATGC
TGGCAAAAAAGGAAATATTATCCTAGCTGTCTCAGACTATATCTCCAAAGTTCTTCATTTGTATCAAGGT
GAGAAGAAGATAGAAGAGATGCTACCCTTGGGGCCAAACAAAGCTCTCTTTTATAAAGGAGTAACCTCAT
ATCTTTTGCCAGGGCAGAAATCTCCATGGTTAGTTCAAAAACCCAAAGGCATGATAACAGACAAACAGCA
AATGGTGAGTTTAAATCCCGAATCCAAGCAAGAAGTCCCTATGTGTATTGATCCTGAATTCAAGCAAGAA
GTTCCTGTGTGCACTAATCCCGAGTCCATGCAAGAAGTTCCCATGTGTATGGATCCTGAGCCCAACCAGG
AAGCTTCCATGTGCACAGATCCCGAATCCAAACAAGAAGTTCCCATGTGCACAGACTCCGAATCCAAGCC
AGAAGTTTCCCAATATACAAACCCAGAGAGCAAGCAAAAATTACCTTCAGGAATAGACACTGAATTTAAC
CTAGAAGCACTCATGTGTACACACCCTGAATTTAAACAAGAAGATGTCATGGATATGGAACCTGAAATAA
AGCAAGTAACCATGGTTTCCGAGTCTGAGATCTTAAAGGTTGCCAGGATGCATCACGTCCACTCAGAAAG
CTACCTAGTGTACAACATTCTGAGCAGTGGGGAGATAGAATGCAGTAACACCCTGGAGGATGAGCTGGAC
CAAGCCCTCCCGAGCCAAGCCTTTATCTACCGCCCAGTCCGGCAGCGCGTCTACGCACTCCTACTCGGGG
ACTGGAAAGATGGAGCCAGCACTGGCCCAGTGGTCAAGGAGTGGTTTGTGTACCCCGGTAACTCCCTGAA
GCACCCAGACCTAGTTAGGCCTCTGCAGATGACCGTTCAAGGGGGAACACCTAGCTTGGAAGTTCTGTGG
CTGAGCCAAGAGCCAGCAGTGCAGGCCCAGCGCCTGGACACCTTGCTAGCCTGCTTCAACCTTTCCTCCT
CAAGAGAAGAGCTGCAAGCAGTTGAGAGCCCGTTGAGAGCGCTGTGCTGCCTCCTGATCTACCTCTTTGT
CCAGGTGGACACTCTTTCCCTGGAAGATCTGCATGCATTTATCGCTCAGGCCTTGTGCCTCCAAGGAAAA
TCAACCTCCCAGCTCATGCACTTACAGCTGGATTACATTAACTCCAGAGCTGTGCAGCTGGGATCCCTCC
TCGTCCGTGGCCTCACCACATTGGTACTAGTCAATAGCGCATGTGGCTTCCCCTGGACAACAAGTGAGTT
TATGCCCTGGAATGTGTTTGATGGCAAGCTTTTCCATCAGAAGTACCTGCAGTCTGAAAAGGGATATGCC
GTGGAAGTTCTTTTGGAACAAAATAGATCGTGGCTCACCAAGTTCCACAACCTGAAGGCAGTGGTCTGCA
AGGCCTGCTCCAAGGAGAACCGGCGCATCGTAGGCAGAACGCATTGGGACTCTCCTTACACAGGGAGGCA
AGGGAGACAGGGCTACAGCTCCTACAGGACAGACTCCACACATGGCCATTCTGGGCAGTCATGGAGAAAC
CAGGGTTCAGGGGGCAGACAGCATGAGCGTAACCACTGGAGAAGATACTAG

Translation (786 aa):
MGVRGLQGFVGSTCPHICTIVNIHELAERHRNKYPGCTPTIVVDAMCCLRYWYTAESWVCGGQWREYYCA
LRNFVAAFTSAGIKLIFFFDGMVEPGKRDEWVKRRLKNNREISKIFHYIKSKRDQPGRNMFFIPSGLAIF
TRFALKTLGQETFCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYFSIGDLCLESLQTIMLCREK
LCESLGLRVADLPLLACLLGNDITPESMFESFRYKCLSSYASVKENAGKKGNIILAVSDYISKVLHLYQG
EKKIEEMLPLGPNKALFYKGVTSYLLPGQKSPWLVQKPKGMITDKQQMVSLNPESKQEVPMCIDPEFKQE
VPVCTNPESMQEVPMCMDPEPNQEASMCTDPESKQEVPMCTDSESKPEVSQYTNPESKQKLPSGIDTEFN
LEALMCTHPEFKQEDVMDMEPEIKQVTMVSESEILKVARMHHVHSESYLVYNILSSGEIECSNTLEDELD
QALPSQAFIYRPVRQRVYALLLGDWKDGASTGPVVKEWFVYPGNSLKHPDLVRPLQMTVQGGTPSLEVLW
LSQEPAVQAQRLDTLLACFNLSSSREELQAVESPLRALCCLLIYLFVQVDTLSLEDLHAFIAQALCLQGK
STSQLMHLQLDYINSRAVQLGSLLVRGLTTLVLVNSACGFPWTTSEFMPWNVFDGKLFHQKYLQSEKGYA
VEVLLEQNRSWLTKFHNLKAVVCKACSKENRRIVGRTHWDSPYTGRQGRQGYSSYRTDSTHGHSGQSWRN
QGSGGRQHERNHWRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH