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Report for CCDS22568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22568.1 Public Mus musculus 8 Got2 23 108 98 CCDS HistoryNCBI Gene:14719Re-query CCDS DB by CCDS ID:22568.1Re-query CCDS DB by GeneID:14719See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034097.7 ENSMUSP00000034097.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034097.7Link to Ensembl Protein Viewer:ENSMUSP00000034097.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034097Re-query CCDS DB by Protein ID:ENSMUSP00000034097
Original member Current member NCBI NM_010325.3 NP_034455.1 Accepted alive Link to Nucleotide Sequence:NM_010325.3Link to Protein Sequence:NP_034455.1Re-query CCDS DB by Nucleotide ID:NM_010325Re-query CCDS DB by Protein ID:NP_034455Link to BLAST:NP_034455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034455.1 430 P05202 430 100% 0 0

Chromosomal Locations for CCDS 22568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95865129 95865251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95866821 95866971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95869472 95869637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95870775 95870925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95871891 95871995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95872176 95872337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95874404 95874463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95875746 95875874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95877713 95877869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95888217 95888305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCCCTCCTGCACTCCAGCCGCATCCTCTCCGGGATGGCTGCTGCCTTTCACCCAGGCCTAGCTGCTG
CAGCCTCTGCCAGAGCCAGCTCCTGGTGGACCCATGTTGAAATGGGACCTCCAGATCCCATCCTGGGCGT
TACCGAAGCCTTCAAGAGAGATACCAACAGCAAGAAGATGAACCTGGGAGTTGGTGCCTACCGGGATGAT
AACGGAAAACCTTACGTGCTCCCCAGTGTCCGGAAGGCAGAGGCCCAGATTGCTGCAAAAAATTTGGACA
AAGAATACCTGCCCATTGGGGGACTGGCTGAATTCTGTAAGGCTTCTGCAGAACTGGCCCTGGGCGAGAA
CAATGAAGTGTTGAAAAGCGGCCGGTTCGTCACTGTGCAGACCATTTCCGGGACTGGAGCCTTAAGGGTC
GGGGCCAGTTTTCTGCAAAGGTTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCATCCTGGGGAA
ATCACACGCCCATCTTCAGGGATGCCGGCATGCAGCTCCAAGGTTATCGCTACTATGACCCCAAGACTTG
CGGTTTTGACTTCTCTGGAGCCCTAGAAGACATATCAAAAATCCCAGAGCAGAGTGTCCTCCTCCTGCAT
GCCTGCGCTCACAACCCCACCGGCGTGGACCCGCGTCCCGAGCAGTGGAAGGAGATAGCGTCCGTGGTGA
AGAAAAAGAATCTCTTCGCATTCTTTGACATGGCCTACCAAGGCTTTGCCAGCGGTGATGGTGATAAGGA
TGCCTGGGCCGTGCGGCACTTCATCGAGCAGGGCATCAATGTCTGCCTCTGCCAATCGTATGCCAAGAAC
ATGGGCCTGTACGGTGAGCGTGTGGGAGCCTTCACGGTGGTCTGCAAAGATGCAGAAGAAGCCAAAAGGG
TGGAGTCACAGCTGAAGATCTTGATCCGTCCCCTGTATTCCAACCCACCTCTCAATGGGGCCCGGATCGC
AGCAACCATCCTGACTTCTCCAGACTTGCGGAAGCAATGGTTGCAAGAGGTGAAAGGCATGGCTGACCGC
ATCATCAGCATGAGGACCCAGCTGGTCTCCAACCTGAAGAAAGAGGGCTCTTCCCACAACTGGCAGCACA
TCACCGACCAGATCGGCATGTTCTGTTTCACCGGCCTAAAGCCAGAGCAGGTAGAGCGGCTGACCAAGGA
GTTCTCGGTCTACATGACAAAGGATGGCCGAATCTCCGTGGCAGGGGTCACCTCTGGCAATGTGGGCTAC
CTTGCCCATGCCATTCACCAGGTCACCAAGTAA

Translation (430 aa):
MALLHSSRILSGMAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDD
NGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRV
GASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLH
ACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKN
MGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQWLQEVKGMADR
IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGY
LAHAIHQVTK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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