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Report for CCDS78843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78843.1 Public Mus musculus 10 Sumo3 23 108 98 CCDS HistoryNCBI Gene:20610Re-query CCDS DB by CCDS ID:78843.1Re-query CCDS DB by GeneID:20610See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099538.5 ENSMUSP00000097136.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099538.5Link to Ensembl Protein Viewer:ENSMUSP00000097136.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000099538Re-query CCDS DB by Protein ID:ENSMUSP00000097136
Original member Current member NCBI NM_001301671.1 NP_001288600.1 Accepted alive Link to Nucleotide Sequence:NM_001301671.1Link to Protein Sequence:NP_001288600.1Re-query CCDS DB by Nucleotide ID:NM_001301671Re-query CCDS DB by Protein ID:NP_001288600Link to BLAST:NP_001288600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288600.1 110 Q9Z172-2 110 100% 0 0

Chromosomal Locations for CCDS 78843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77606948 77606968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77609812 77609940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77613980 77614051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77616148 77616258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGACCACTGTGTTGGCTCAGGAGGGTGTGAAGACAGAGAATGACCACATCAACCTGAAAGTGGCGGGGC
AGGATGGCTCGGTGGTACAGTTCAAGATCAAGAGGCACACCCCACTGAGCAAGCTGATGAAGGCCTACTG
TGAGAGGCAGGGCTTGTCAATGAGGCAGATTCGATTCCGGTTTGATGGACAACCAATCAATGAAACAGAC
ACTCCAGCCCAGCTGGAGATGGAGGATGAGGACACCATTGATGTATTCCAGCAGCAGACAGGAGGATCAG
CCTCCCGAGGGAGCGTCCCCACACCCAACCGTTGTCCTGACCTGTGCTATTGA

Translation (110 aa):
MTTVLAQEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD
TPAQLEMEDEDTIDVFQQQTGGSASRGSVPTPNRCPDLCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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