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Report for CCDS21930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21930.1 Public Mus musculus 7 Ctbp2 23 108 98 CCDS HistoryNCBI Gene:13017Re-query CCDS DB by CCDS ID:21930.1Re-query CCDS DB by GeneID:13017See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033269.14 ENSMUSP00000033269.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033269.14Link to Ensembl Protein Viewer:ENSMUSP00000033269.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033269Re-query CCDS DB by Protein ID:ENSMUSP00000033269
Original member NCBI NM_009980.4 NP_034110.1 Updated not alive Link to Nucleotide Sequence:NM_009980.4Link to Protein Sequence:NP_034110.1Re-query CCDS DB by Nucleotide ID:NM_009980Re-query CCDS DB by Protein ID:NP_034110
Current member NCBI NM_009980.5 NP_034110.1 Accepted alive Link to Nucleotide Sequence:NM_009980.5Link to Protein Sequence:NP_034110.1Re-query CCDS DB by Nucleotide ID:NM_009980Re-query CCDS DB by Protein ID:NP_034110Link to BLAST:NP_034110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034110.1 445 P56546-1 445 100% 0 0

Chromosomal Locations for CCDS 21930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132988171 132988351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132989990 132990107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132990431 132990558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991039 132991169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991562 132991776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132995159 132995365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132998807 132998951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132999191 132999345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133025713 133025770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCCCTTGTGGATAAGCACAAAGTCAAGCGGCAGCGATTGGACAGGATTTGTGAAGGTATCCGCCCCC
AGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCACTGCTGGATGGCAGAGACTGCACTGTGGA
GATGCCCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGATGCACAGTCCACTCAGGAAATCCATGAG
AAGGTGTTGAATGAGGCTGTGGGTGCCATGATGTACCACACCATCACCCTCACCAGGGAAGACCTGGAGA
AGTTCAAGGCCCTGAGAGTGATCGTGCGAATCGGTAGTGGCTACGACAACGTGGACATCAAGGCTGCTGG
CGAGCTCGGGATCGCTGTGTGCAACATCCCATCTGCTGCAGTGGAGGAGACAGCAGATTCGACAGTCTGC
CACATTCTCAATCTGTATCGGCGGAACACATGGCTCTACCAGGCCCTCCGAGAAGGCACTCGAGTACAGA
GTGTGGAACAGATCCGTGAGGTCGCCTCAGGAGCTGCTCGGATCCGAGGGGAAACACTGGGCCTCATTGG
CTTTGGTCGCACAGGGCAGGCAGTTGCTGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGAC
CCCTACTTACAGGATGGGATAGAACGATCTCTGGGCGTGCAAAGGGTCTACACCCTGCAGGACTTGCTAT
ATCAGAGCGACTGCGTCTCCTTGCACTGCAACCTGAACGAGCACAACCATCACCTCATCAATGACTTCAC
TATCAAGCAGATGAGGCAAGGTGCATTCCTTGTGAATGCAGCCCGAGGTGGCCTGGTGGATGAGAAAGCC
TTAGCTCAGGCCCTCAAGGAGGGCAGGATACGAGGAGCTGCCCTGGATGTGCACGAGTCTGAGCCCTTCA
GCTTCGCCCAGGGCCCATTGAAGGATGCTCCAAATCTCATCTGCACACCACACACAGCCTGGTACAGTGA
ACAAGCATCACTAGAGATGAGGGAAGCAGCAGCCACTGAGATCCGCCGAGCAATCACAGGTCGCATCCCA
GAAAGCTTACGAAACTGTGTCAACAAAGAATTCTTCGTGACTTCAGCTCCTTGGTCAGTCATTGACCAGC
AAGCAATTCACCCCGAGCTCAATGGTGCCACATACAGGTATCCACCCGGCATTGTAGGTGTGGCTCCAGG
AGGGCTTCCTCCAGCGATGGAAGGGATCATCCCTGGGGGCATCCCCGTGACTCACAACCTCCCCACAGTG
GCACACCCCTCCCAAGCTCCTTCCCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACG
AGCAATAG

Translation (445 aa):
MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHE
KVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVC
HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYD
PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA
LAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP
ESLRNCVNKEFFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPPAMEGIIPGGIPVTHNLPTV
AHPSQAPSPNQPTKHGDNREHPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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