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Report for CCDS30098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30098.1 Public Mus musculus X Xiap 23 108 98 CCDS HistoryNCBI Gene:11798Re-query CCDS DB by CCDS ID:30098.1Re-query CCDS DB by GeneID:11798See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026978.6 ENSMUSP00000026978.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026978.6Link to Ensembl Protein Viewer:ENSMUSP00000026978.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026978Re-query CCDS DB by Protein ID:ENSMUSP00000026978
Original member Current member EBI ENSMUST00000055483.9 ENSMUSP00000061074.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055483.9Link to Ensembl Protein Viewer:ENSMUSP00000061074.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055483Re-query CCDS DB by Protein ID:ENSMUSP00000061074
Original member Current member EBI ENSMUST00000115094.7 ENSMUSP00000110746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115094.7Link to Ensembl Protein Viewer:ENSMUSP00000110746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115094Re-query CCDS DB by Protein ID:ENSMUSP00000110746
Original member Current member EBI ENSMUST00000115095.8 ENSMUSP00000110747.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115095.8Link to Ensembl Protein Viewer:ENSMUSP00000110747.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115095Re-query CCDS DB by Protein ID:ENSMUSP00000110747
Original member Current member NCBI NM_001301639.1 NP_001288568.1 Accepted alive Link to Nucleotide Sequence:NM_001301639.1Link to Protein Sequence:NP_001288568.1Re-query CCDS DB by Nucleotide ID:NM_001301639Re-query CCDS DB by Protein ID:NP_001288568Link to BLAST:NP_001288568.1
Original member Current member NCBI NM_001301641.1 NP_001288570.1 Accepted alive Link to Nucleotide Sequence:NM_001301641.1Link to Protein Sequence:NP_001288570.1Re-query CCDS DB by Nucleotide ID:NM_001301641Re-query CCDS DB by Protein ID:NP_001288570Link to BLAST:NP_001288570.1
Original member Current member NCBI NM_009688.3 NP_033818.2 Accepted alive Link to Nucleotide Sequence:NM_009688.3Link to Protein Sequence:NP_033818.2Re-query CCDS DB by Nucleotide ID:NM_009688Re-query CCDS DB by Protein ID:NP_033818Link to BLAST:NP_033818.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288568.1 496 Q60989 496 100% 0 0
NP_001288570.1 496 Q60989 496 100% 0 0
NP_033818.2 496 Q60989 496 100% 0 0

Chromosomal Locations for CCDS 30098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 42094399 42095272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42096613 42096712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42098804 42098882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42099837 42099879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42101996 42102196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42104791 42104984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGACTTTTAACAGTTTTGAAGGAACTAGAACTTTTGTACTTGCAGACACCAATAAGGATGAAGAATTTG
TAGAAGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGTAGTAGTCCTGTTTCAGCATCAACATT
GGCGCGAGCTGGGTTTCTTTATACCGGTGAAGGAGACACCGTGCAATGTTTCAGTTGTCATGCGGCAATA
GATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGAGAATATCCCCAAATTGCAGATTTATCA
ATGGTTTTTATTTTGAAAATGGTGCTGCACAGTCTACAAATCCTGGTATCCAAAATGGCCAGTACAAATC
TGAAAACTGTGTGGGAAATAGAAATCCTTTTGCCCCTGACAGGCCACCTGAGACTCATGCTGATTATCTC
TTGAGAACTGGACAGGTTGTAGATATTTCAGACACCATATACCCGAGGAACCCTGCCATGTGTAGTGAAG
AAGCCAGATTGAAGTCATTTCAGAACTGGCCGGACTATGCTCATTTAACCCCCAGAGAGTTAGCTAGTGC
TGGCCTCTACTACACAGGGGCTGATGATCAAGTGCAATGCTTTTGTTGTGGGGGAAAACTGAAAAATTGG
GAACCCTGTGATCGTGCCTGGTCAGAACACAGGAGACACTTTCCCAATTGCTTTTTTGTTTTGGGCCGGA
ACGTTAATGTTCGAAGTGAATCTGGTGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAACTCTCCAAG
AAATCCAGCCATGGCAGAATATGAAGCACGGATCGTTACTTTTGGAACATGGACATCCTCAGTTAACAAG
GAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAGGTGAAGGCGATAAAGTGAAGTGCTTTCACTGTGGAG
GAGGGCTCACGGATTGGAAGCCAAGTGAAGACCCTTGGGAACAGCATGCGAAGTGGTACCCAGGGTGCAA
ATACCTATTGGATGAGAAGGGGCAAGAATATATAAATAATATTCATTTAACCCATTCACTTGAGGAATCT
TTGGGAAGAACTGCTGAAAAAACACCATCGCTAACTAAAAAAATCGATGATACCATCTTCCAGAATCCTA
TGGTGCAAGAAGCTATACGAATGGGATTTAGCTTCAAGGACATTAAGAAAACAATGGAAGAAAAAATCCA
AACATCCGGGAGCAGCTATCTATCACTTGAGGTCCTGATTGCAGATCTTGTGAGTGCTCAGAAAGATAAT
ACGGAGGATGAGTCAAGTCAAACTTCATTGCAGAAAGACATTAGTACTGAAGAGCAGCTAAGGCGCCTAC
AAGAGGAGAAGCTTTGCAAAATCTGTATGGATAGAAATATTGCTATCGTTTTTGTTCCTTGTGGACATCT
GGTCACTTGTAAACAGTGTGCAGAAGCAGTTGACAAATGTCCCATGTGCTACACCGTCATTACGTTCAAG
CAAAAAATTTTTATGTCTTAG

Translation (496 aa):
MTFNSFEGTRTFVLADTNKDEEFVEEFNRLKTFANFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHAAI
DRWQYGDSAVGRHRRISPNCRFINGFYFENGAAQSTNPGIQNGQYKSENCVGNRNPFAPDRPPETHADYL
LRTGQVVDISDTIYPRNPAMCSEEARLKSFQNWPDYAHLTPRELASAGLYYTGADDQVQCFCCGGKLKNW
EPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTNSPRNPAMAEYEARIVTFGTWTSSVNK
EQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLDEKGQEYINNIHLTHSLEES
LGRTAEKTPSLTKKIDDTIFQNPMVQEAIRMGFSFKDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDN
TEDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK
QKIFMS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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