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Report for CCDS36738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36738.1 Public Mus musculus 13 Polr3g 23 108 98 CCDS HistoryNCBI Gene:67486Re-query CCDS DB by CCDS ID:36738.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048993.11 ENSMUSP00000035289.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048993.11Link to Ensembl Protein Viewer:ENSMUSP00000035289.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048993Re-query CCDS DB by Protein ID:ENSMUSP00000035289
Original member Current member NCBI NM_001081176.1 NP_001074645.1 Accepted alive Link to Nucleotide Sequence:NM_001081176.1Link to Protein Sequence:NP_001074645.1Re-query CCDS DB by Nucleotide ID:NM_001081176Re-query CCDS DB by Protein ID:NP_001074645Link to BLAST:NP_001074645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074645.1 223 Q6NXY9-1 223 100% 0 0

Chromosomal Locations for CCDS 36738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 81676036 81676122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81678116 81678259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81682112 81682194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81687126 81687176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81689197 81689256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81694648 81694777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81699744 81699860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCTGGCAATAAAGGAAGAGGGCGTGCTGCCTACACCTTTAATATCGAAGCTGTTGGATTCAGCAGAG
GGGAGAAGTTACCTGATGTTGTGTTGAAGCCTCCACCCCTGTTTCCTGATACAGACTACAAGCCGGTGCC
CCTGAAAACGGGAGAAGATGAGGATTACATGCTGGCCTTGAAGCAGGAGTTGAGGGAAACAGTGAAACGA
TTGCCGTACTTTATTGAACCACCCGAAGAAAAACAAGATGATATTGAAAGGTATAGCAAACGATACATGA
AGGTCTATAAAGAAGAATGGGTACCAGATTGGAGAAGACTTCCAAGAGAGATGATGCCAAGGAAAAAATG
CAAAAAAGGGGATCCAAAATCCAAGCCGAGCAAAGCTGCAGCCAAGGCTACATCACTCATTAATTCTGCA
GATGTGTTGAAAACGATTGAGGAACTGGAAAAGAGAGGCGAGGGTGAAAGATCGGATGAAGAAAACGAAG
AGAAAGAAGGGAGCAAAGAGAAAGATAAAGATGATGAGGAGGATGGCGAGGAAGATGCAGAACAGGAGGA
CTACGATGAAGAGGAACAAGAAGAGGAGAATGACTACATTAACTCCTACTTCGACAACGGCGATGATTTT
GGTGTAGACAGCGACGACAACATGGATGAAGCCACCTACTAG

Translation (223 aa):
MAGNKGRGRAAYTFNIEAVGFSRGEKLPDVVLKPPPLFPDTDYKPVPLKTGEDEDYMLALKQELRETVKR
LPYFIEPPEEKQDDIERYSKRYMKVYKEEWVPDWRRLPREMMPRKKCKKGDPKSKPSKAAAKATSLINSA
DVLKTIEELEKRGEGERSDEENEEKEGSKEKDKDDEEDGEEDAEQEDYDEEEQEEENDYINSYFDNGDDF
GVDSDDNMDEATY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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