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Report for CCDS17256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17256.1 Public Mus musculus 3 Mtfr1 23 108 98 CCDS HistoryNCBI Gene:67472Re-query CCDS DB by CCDS ID:17256.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119865.7 ENSMUSP00000112752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119865.7Link to Ensembl Protein Viewer:ENSMUSP00000112752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119865Re-query CCDS DB by Protein ID:ENSMUSP00000112752
Original member Current member EBI ENSMUST00000117529.7 ENSMUSP00000112824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117529.7Link to Ensembl Protein Viewer:ENSMUSP00000112824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117529Re-query CCDS DB by Protein ID:ENSMUSP00000112824
Original member Current member EBI ENSMUST00000130645.7 ENSMUSP00000119724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130645.7Link to Ensembl Protein Viewer:ENSMUSP00000119724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130645Re-query CCDS DB by Protein ID:ENSMUSP00000119724
Original member NCBI NM_001253390.2 NP_001240319.1 Updated not alive Link to Nucleotide Sequence:NM_001253390.2Link to Protein Sequence:NP_001240319.1Re-query CCDS DB by Nucleotide ID:NM_001253390Re-query CCDS DB by Protein ID:NP_001240319
Current member NCBI NM_001253390.3 NP_001240319.1 Accepted alive Link to Nucleotide Sequence:NM_001253390.3Link to Protein Sequence:NP_001240319.1Re-query CCDS DB by Nucleotide ID:NM_001253390Re-query CCDS DB by Protein ID:NP_001240319Link to BLAST:NP_001240319.1
Original member NCBI NM_001253391.2 NP_001240320.1 Updated not alive Link to Nucleotide Sequence:NM_001253391.2Link to Protein Sequence:NP_001240320.1Re-query CCDS DB by Nucleotide ID:NM_001253391Re-query CCDS DB by Protein ID:NP_001240320
Current member NCBI NM_001253391.3 NP_001240320.1 Accepted alive Link to Nucleotide Sequence:NM_001253391.3Link to Protein Sequence:NP_001240320.1Re-query CCDS DB by Nucleotide ID:NM_001253391Re-query CCDS DB by Protein ID:NP_001240320Link to BLAST:NP_001240320.1
Original member NCBI NM_001356295.1 NP_001343224.1 Updated not alive Link to Nucleotide Sequence:NM_001356295.1Link to Protein Sequence:NP_001343224.1Re-query CCDS DB by Nucleotide ID:NM_001356295Re-query CCDS DB by Protein ID:NP_001343224
Current member NCBI NM_001356295.2 NP_001343224.1 Accepted alive Link to Nucleotide Sequence:NM_001356295.2Link to Protein Sequence:NP_001343224.1Re-query CCDS DB by Nucleotide ID:NM_001356295Re-query CCDS DB by Protein ID:NP_001343224Link to BLAST:NP_001343224.1
Original member NCBI NM_026182.6 NP_080458.1 Updated not alive Link to Nucleotide Sequence:NM_026182.6Link to Protein Sequence:NP_080458.1Re-query CCDS DB by Nucleotide ID:NM_026182Re-query CCDS DB by Protein ID:NP_080458
Current member NCBI NM_026182.7 NP_080458.1 Accepted alive Link to Nucleotide Sequence:NM_026182.7Link to Protein Sequence:NP_080458.1Re-query CCDS DB by Nucleotide ID:NM_026182Re-query CCDS DB by Protein ID:NP_080458Link to BLAST:NP_080458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240319.1 328 Q99MB2 328 100% 0 0
NP_001240320.1 328 Q99MB2 328 100% 0 0
NP_001343224.1 328 Q99MB2 328 100% 0 0
NP_080458.1 328 Q99MB2 328 100% 0 0

Chromosomal Locations for CCDS 17256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19200102 19200167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19206452 19206550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19211468 19211583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19215471 19215703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19217180 19217423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19218162 19218321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19219038 19219106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGCTGGGCTGGATTAAGTGCCTGATGAGGATGTGGTTTCAGCGAGTTGGGGTCAGCATGCAGTCGGTAC
TATGGTCTGGAAAACCATATGGTTCATCTCGAAGTATCGTAAGGAAAATTGGTACCAACTTATCTCTGAT
TCAGTGTCCAAGAGTTCAATTTCAGCTTACCAGCCATGCAACAGAATGGAGTCCCGCACACTCAGGAGAG
GATGCGGTGGCATCTTTTGCTGATGTTGGATTGGTAGCCACTGAAGAAGGAGAGTGCTCAATAAGACTCA
GGGCAGAAGTCAGTTCCAAGCCTCCTCATGAGGATGACCCTCCTTGCTTTGAGAAGCCCCCAAGCAGGCA
CACTTCCTTCCCAAGCCTGTCTCAAGACAAGCCTTCTCCAGAGAGGACGCTGGCCAGCGAGGAGGCCCTG
CAGAAGATCTCTGCCCTTGAGAATGAGCTTGCTGCCCTTAGAGCTCAGATTGCCAAGATTGTGACCCTGC
AGGAGCAACAGAGTCCAAGTGCAGGTTGCTTAGATTCTTCCACATCTGTTACTGTAGCACCACCACCACC
ACCTCCTCCTCCTCCCCCTCCCCTTCCGTTGGTACTCCACCAAAGTACGTCTGCTCTTGATCTGATTAAA
GAAAGAAGAGAGCAGAGACTCAGTGCTGGAAAGACTTTGGCTACGGGCCACCCAAAGAAGCCTGACATGC
CAAATATGCTTGAGATCCTTAAAGACATGAACAGTGTGAAGCTACGGTCAGTCAAGAGGTCAGAGAAAGA
TGTAAAACCCAGGCCAGCGGATACTGACCATGCTGCCTTCATAGCAGAGGCTCTGAAAAAGAAGTTTGCA
TATCGACACAATAGCCAAGGAGAAACTGAAAGAGGAATTCCAAAGCCAGAGTCAGAGGCCACCTCAGAGC
CAGCCCTGTTTGGCCCACATATATTGAAGTCTACAGGGAAAATGAAGGCTTTAATTGAAAATGTTCCCGA
CTCCTAA

Translation (328 aa):
MLGWIKCLMRMWFQRVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHATEWSPAHSGE
DAVASFADVGLVATEEGECSIRLRAEVSSKPPHEDDPPCFEKPPSRHTSFPSLSQDKPSPERTLASEEAL
QKISALENELAALRAQIAKIVTLQEQQSPSAGCLDSSTSVTVAPPPPPPPPPPPLPLVLHQSTSALDLIK
ERREQRLSAGKTLATGHPKKPDMPNMLEILKDMNSVKLRSVKRSEKDVKPRPADTDHAAFIAEALKKKFA
YRHNSQGETERGIPKPESEATSEPALFGPHILKSTGKMKALIENVPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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